Initial commit with GWT code

.classpath

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+<?xml version="1.0" encoding="UTF-8"?>
+<classpath>
+	<classpathentry kind="src" path="src"/>
+	<classpathentry kind="src" output="test-classes" path="test"/>
+	<classpathentry kind="con" path="com.google.gwt.eclipse.core.GWT_CONTAINER"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER"/>
+	<classpathentry kind="output" path="war/WEB-INF/classes"/>
+</classpath>

.gitignore

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+*.class
+
+# Package Files #
+*.jar
+*.war
+
+# gwt caches and compiled units #
+war/gwt_bree/
+gwt-unitCache/
+
+# boilerplate generated classes #
+.apt_generated/
+
+# more caches and things from deploy #
+war/WEB-INF/deploy/
+war/WEB-INF/classes/
+

.project

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+<?xml version="1.0" encoding="UTF-8"?>
+<projectDescription>
+	<name>stargenetics_gwt_java</name>
+	<comment></comment>
+	<projects>
+	</projects>
+	<buildSpec>
+		<buildCommand>
+			<name>org.eclipse.wst.common.project.facet.core.builder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+		<buildCommand>
+			<name>org.eclipse.jdt.core.javabuilder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+		<buildCommand>
+			<name>com.google.gdt.eclipse.core.webAppProjectValidator</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+		<buildCommand>
+			<name>com.google.gwt.eclipse.core.gwtProjectValidator</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+	</buildSpec>
+	<natures>
+		<nature>org.eclipse.jdt.core.javanature</nature>
+		<nature>com.google.gwt.eclipse.core.gwtNature</nature>
+		<nature>org.eclipse.wst.common.project.facet.core.nature</nature>
+	</natures>
+</projectDescription>

.settings/com.google.gdt.eclipse.core.prefs

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+eclipse.preferences.version=1
+warSrcDir=war
+warSrcDirIsOutput=true

.settings/com.google.gwt.eclipse.core.prefs

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+eclipse.preferences.version=1
+filesCopiedToWebInfLib=gwt-servlet.jar
+gwtCompileSettings=PGd3dC1jb21waWxlLXNldHRpbmdzPjxsb2ctbGV2ZWw+VFJBQ0U8L2xvZy1sZXZlbD48b3V0cHV0LXN0eWxlPk9CRlVTQ0FURUQ8L291dHB1dC1zdHlsZT48ZXh0cmEtYXJncz48IVtDREFUQVtdXT48L2V4dHJhLWFyZ3M+PHZtLWFyZ3M+PCFbQ0RBVEFbLVhteDUxMm1dXT48L3ZtLWFyZ3M+PGVudHJ5LXBvaW50LW1vZHVsZT5zdGFyLmdlbmV0aWNzLlN0YXJnZW5ldGljc19nd3RfamF2YTwvZW50cnktcG9pbnQtbW9kdWxlPjwvZ3d0LWNvbXBpbGUtc2V0dGluZ3M+

.settings/org.eclipse.jdt.core.prefs

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+eclipse.preferences.version=1
+org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
+org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.6
+org.eclipse.jdt.core.compiler.compliance=1.6
+org.eclipse.jdt.core.compiler.problem.assertIdentifier=error
+org.eclipse.jdt.core.compiler.problem.enumIdentifier=error
+org.eclipse.jdt.core.compiler.source=1.6

.settings/org.eclipse.wst.common.project.facet.core.xml

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+<?xml version="1.0" encoding="UTF-8"?>
+<faceted-project>
+  <installed facet="java" version="1.6"/>
+</faceted-project>

src/java/beans/JavaBeans.gwt.xml

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+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE module PUBLIC "-//Google Inc.//DTD Google Web Toolkit 2.5.1//EN" "http://google-web-toolkit.googlecode.com/svn/tags/2.5.1/distro-source/core/src/gwt-module.dtd">
+<module>
+	<inherits name="com.google.gwt.user.User" />
+	<source path=""/>
+</module>

src/java/beans/PropertyChangeEvent.java

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+package java.beans;
+
+public class PropertyChangeEvent
+{
+
+	private Object source;
+	private String name;
+	private Object oldValue;
+	private Object newValue;
+
+	public PropertyChangeEvent(Object source, String name, Object oldValue, Object newValue)
+    {
+		this.source = source;
+		this.name = name;
+		this.oldValue = oldValue;
+		this.newValue = newValue;
+    }
+
+	public String getPropertyName()
+    {
+	    return name;
+    }
+
+	public Object getOldValue()
+    {
+	    return oldValue;
+    }
+
+	public Object getNewValue()
+    {
+	    return newValue;
+    }
+}

src/java/beans/PropertyChangeListener.java

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+package java.beans;
+
+public interface PropertyChangeListener
+{
+    public void propertyChange(PropertyChangeEvent e);
+
+}

src/java/beans/PropertyChangeSupport.java

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+package java.beans;
+
+import java.util.ArrayList;
+
+public class PropertyChangeSupport
+{
+
+	private Object source;
+	private ArrayList<PropertyChangeListener> listeners = new ArrayList<PropertyChangeListener>();
+
+	public PropertyChangeSupport(Object source)
+    {
+		this.source = source;
+    }
+
+	public void firePropertyChange(PropertyChangeEvent propertyChangeEvent)
+    {
+		for( PropertyChangeListener l : listeners)
+		{
+			l.propertyChange(propertyChangeEvent);
+		}
+
+    }
+
+	public void addPropertyChangeListener(PropertyChangeListener listener)
+    {
+		listeners.add(listener);
+    }
+
+	public void removePropertyChangeListener(PropertyChangeListener listener)
+    {
+		listeners.remove(listener);
+    }
+
+}

src/java/beans/StringTokenizer.java

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+package java.beans;
+
+public class StringTokenizer
+{
+	//TODO: make better or correct
+	private String str;
+	private String split;
+	private int index;
+
+	public StringTokenizer(String str, String split)
+    {
+		this.str = str;
+		this.split = split;
+		this.index = 0;
+    }
+
+	public boolean hasMoreTokens()
+    {
+	    return str.indexOf(split,index) > 0; 
+    }
+
+	public String nextToken()
+    {
+		int next_index = str.indexOf(split,index);
+		String ret = str.substring(index, next_index);
+		index = next_index;
+		return ret;
+    }
+
+}

src/star/genetics/Stargenetics_gwt_java.gwt.xml

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+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+  When updating your version of GWT, you should also update this DTD reference,
+  so that your app can take advantage of the latest GWT module capabilities.
+-->
+<!DOCTYPE module PUBLIC "-//Google Inc.//DTD Google Web Toolkit 2.5.1//EN"
+  "http://google-web-toolkit.googlecode.com/svn/tags/2.5.1/distro-source/core/src/gwt-module.dtd">
+<module rename-to='stargenetics_gwt_java'>
+  <!-- Inherit the core Web Toolkit stuff.                        -->
+  <inherits name='com.google.gwt.user.User'/>
+
+  <!-- Inherit the default GWT style sheet.  You can change       -->
+  <!-- the theme of your GWT application by uncommenting          -->
+  <!-- any one of the following lines.                            -->
+  <inherits name='com.google.gwt.user.theme.clean.Clean'/>
+  <!-- <inherits name='com.google.gwt.user.theme.standard.Standard'/> -->
+  <!-- <inherits name='com.google.gwt.user.theme.chrome.Chrome'/> -->
+  <!-- <inherits name='com.google.gwt.user.theme.dark.Dark'/>     -->
+
+  <!-- Other module inherits                                      -->
+<inherits name="java.beans.JavaBeans"/>
+  <!-- Specify the app entry point class.                         -->
+  <entry-point class='star.genetics.client.Stargenetics_gwt_java'/>
+
+  <!-- Specify the paths for translatable code                    -->
+  <source path='client'/>
+  <source path='genetic'/>
+  <source path='shared'/>
+  <source path='utils'/>
+  <source path='visualizers'/>
+  <source path='xls'/>
+
+</module>

src/star/genetics/client/Helper.java

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+package star.genetics.client;
+
+import java.util.HashMap;
+import java.util.Map;
+import java.util.Map.Entry;
+import java.util.TreeMap;
+
+import star.genetics.genetic.model.Creature;
+import star.genetics.genetic.model.ModelModifiedProvider;
+import star.genetics.visualizers.Visualizer;
+import star.genetics.visualizers.VisualizerFactory;
+
+public class Helper
+{
+	public static void setVisualizerFromCreature(Visualizer v, Creature c)
+	{
+		v.setName(c.getName());
+		v.setNote(c.getNote());
+		v.setProperties(c.getProperties(), c.getSex());
+	}
+
+	public static void setVisualizerFromCreature(Visualizer v, Creature c, HashMap<String, String> additional)
+	{
+		v.setName(c.getName());
+		v.setNote(c.getNote());
+		// additional.putAll(c.getProperties());
+		HashMap<String, String> prop = new HashMap<String, String>();
+		prop.putAll(c.getProperties());
+		prop.putAll(additional);
+		v.setProperties(prop, c.getSex());
+	}
+
+	public static Map<String, String> parse(String value)
+	{
+		Map<String, String> ret = new TreeMap<String, String>();
+		if (value != null)
+		{
+			if (value.contains("=")) //$NON-NLS-1$
+			{
+				String elements[] = value.split(","); //$NON-NLS-1$
+				for (String element : elements)
+				{
+					if (element.indexOf('=') != -1)
+					{
+						String[] pair = element.split("=", 2); //$NON-NLS-1$
+						ret.put(pair[0], pair[1]);
+					}
+					else
+					{
+						throw new RuntimeException();
+						//throw new RuntimeException(MessageFormat.format(Messages.getString("Helper.0"), element, value)); //$NON-NLS-1$
+					}
+				}
+			}
+			else if (!value.equalsIgnoreCase("wildtype")) //$NON-NLS-1$
+			{
+				throw new RuntimeException(Messages.getString("Helper.5")); //$NON-NLS-1$
+			}
+		}
+		return ret;
+	}
+
+	public static String export(Map<String, String> source)
+	{
+		StringBuffer sb = new StringBuffer();
+		for (Entry<String, String> entry : source.entrySet())
+		{
+			sb.append(entry.getKey() + "=" + entry.getValue() + ","); //$NON-NLS-1$ //$NON-NLS-2$
+		}
+		sb.setLength(sb.length() - 1);
+		return sb.toString();
+	}
+
+	private static String MODEL_PROVIDER_EXCEPTION = "Model Modified Provider not found"; //$NON-NLS-1$
+
+}

src/star/genetics/client/Messages.java

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+package star.genetics.client;
+
+//import java.util.Locale;
+//import java.util.MissingResourceException;
+//import java.util.ResourceBundle;
+
+public class Messages
+{
+
+	public static String getString(String key)
+	{
+		return '!' + key + '!';
+	}
+
+}