Build ANTs #19
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| name: Build ANTs | |
| on: | |
| pull_request: | |
| branches: [ master ] | |
| workflow_dispatch: | |
| inputs: | |
| git_ref: | |
| description: 'Upstream ANTsX/ANTs commit ref to check out when building' | |
| required: true | |
| default: 'b37e8b56e4e518b0f2947f80d0e3701a5ddfe120' | |
| jobs: | |
| build: | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| # first, rewrite OS names to be safe for github artifacts. | |
| - name: names | |
| run: | | |
| OS="${{ matrix.os }}" | |
| OS=$(echo "$OS" | sed s/://) | |
| echo "ARTIFACT=$OS" >> $GITHUB_ENV | |
| - name: package | |
| run: | | |
| # download and extract pre-built ants | |
| case "${{ env.ARTIFACT }}" in | |
| ubuntu-latest) | |
| URL="https://github.com/spinalcordtoolbox/build_ANTs/releases/download/r20220516-2/sct-apps_centos7.tar.gz" | |
| ;; | |
| macos-latest) | |
| URL="https://github.com/spinalcordtoolbox/build_ANTs/releases/download/r20220516-2/sct-apps_macos-10.15.tar.gz" | |
| ;; | |
| curl -L "$URL" -o ants-unix.tar.gz | |
| unzip ants-unix.tar.gz | |
| # snip out the apps we need for https://github.com/neuropoly/spinalcordtoolbox, since including all of ANTS is too much | |
| mkdir sct-apps/ | |
| cp ants-unix/ants-2.4.4/bin/{antsRegistration,antsSliceRegularizedRegistration,antsApplyTransforms,ComposeMultiTransform} sct-apps | |
| (cd sct-apps; for i in *; do mv $i isct_$i; done) | |
| cp COPYING.txt sct-apps | |
| tar -zcvf sct-apps_${{ env.ARTIFACT }}.tar.gz sct-apps/ | |
| continue-on-error: true | |
| - name: results (DEBUG) | |
| run: find . | |
| - name: Upload result | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: sct-apps_${{ env.ARTIFACT }} | |
| #path: fakeroot/ # this is 2.3G large in this build | |
| path: sct-apps_${{ env.ARTIFACT }}.tar.gz | |
| build-manylinuxes: # Github only supports Ubuntu natively; for other Linuxes, we need to use Docker | |
| strategy: | |
| matrix: | |
| os: ['quay.io/centos/centos:stream8'] | |
| runs-on: ubuntu-latest | |
| container: ${{ matrix.os }} | |
| steps: | |
| - name: package | |
| run: | | |
| # download and extract pre-built ants | |
| curl -L "https://github.com/ANTsX/ANTs/releases/download/v2.4.4/ants-2.4.4-centos7-X64-gcc.zip" -o ants-centos.tar.gz | |
| unzip ants-centos.tar.gz | |
| # snip out the apps we need for https://github.com/neuropoly/spinalcordtoolbox, since including all of ANTS is too much | |
| mkdir sct-apps/ | |
| cp ants-centos/ants-2.4.4/bin/{antsRegistration,antsSliceRegularizedRegistration,antsApplyTransforms,ComposeMultiTransform} sct-apps | |
| (cd sct-apps; for i in `ls`; do mv $i isct_$i; done) | |
| cp COPYING.txt sct-apps | |
| tar -zcvf sct-apps_${{ env.ARTIFACT }}.tar.gz sct-apps/ | |
| continue-on-error: true | |
| - name: results (DEBUG) | |
| run: find . | |
| - name: Upload result | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: sct-apps_centos-8 | |
| #path: fakeroot/ # this is 2.3G large in this build | |
| path: sct-apps_centos-8.tar.gz | |
| build-windows: | |
| strategy: | |
| matrix: | |
| os: [ windows-latest ] | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash | |
| steps: | |
| # first, rewrite OS names to be safe for github artifacts. | |
| - name: names | |
| run: | | |
| OS="${{ matrix.os }}" | |
| OS=$(echo "$OS" | sed s/://) | |
| echo "ARTIFACT=$OS" >> $GITHUB_ENV | |
| - name: package | |
| run: | | |
| curl -L "https://github.com/ANTsX/ANTs/releases/download/v2.4.4/ants-2.4.4-ubuntu-22.04-X64-gcc.zip" -o ants-windows.tar.gz | |
| unzip ants-windows.tar.gz | |
| # snip out the apps we need for https://github.com/neuropoly/spinalcordtoolbox, since including all of ANTS is too much | |
| mkdir sct-apps/ | |
| cp ants-windows/ants-2.4.4/bin/{antsRegistration,antsSliceRegularizedRegistration,antsApplyTransforms,ComposeMultiTransform}.exe sct-apps | |
| (cd sct-apps; for i in `ls`; do mv $i isct_$i; done) | |
| cp COPYING.txt sct-apps | |
| tar -zcvf sct-apps_${{ env.ARTIFACT }}.tar.gz sct-apps/ | |
| continue-on-error: true | |
| - name: results (DEBUG) | |
| run: find . | |
| - name: Upload result | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: sct-apps_${{ env.ARTIFACT }} | |
| path: sct-apps_${{ env.ARTIFACT }}.tar.gz | |
| release: | |
| needs: [build, build-manylinuxes, build-windows] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| name: sct-apps_centos-8 | |
| continue-on-error: true | |
| - name: checkin # DEBUG | |
| run: find . | |
| # - uses: actions/download-artifact@v4 | |
| # with: | |
| # name: sct-apps_centos8 | |
| # continue-on-error: true | |
| # - name: checkin # DEBUG | |
| # run: find . | |
| # - uses: actions/download-artifact@v4 | |
| # with: | |
| # name: sct-apps_archlinux | |
| # continue-on-error: true | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| name: sct-apps_ubuntu-latest | |
| continue-on-error: true | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| name: sct-apps_macos-latest | |
| continue-on-error: true | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| name: sct-apps_windows-latest | |
| continue-on-error: true | |
| - name: Create Release | |
| id: create_release | |
| uses: ncipollo/release-action@v1 | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| with: | |
| # name the release with the run_id to allow multiple builds on the same branch/tag | |
| # https://github.com/actions/create-release/issues/2#issuecomment-613591846 | |
| tag: ${{ github.ref }}-${{github.run_id }} | |
| name: Release ${{ github.sha }} | |
| draft: true | |
| prerelease: true | |
| artifacts: 'sct-apps_centos-8/sct-apps_centos-8.tar.gz,sct-apps_ubuntu-latest/sct-apps_ubuntu-latest.tar.gz,sct-apps_macos-latest/sct-apps_macos-latest.tar.gz,sct-apps_windows-latest/sct-apps_windows-latest.tar.gz' |