BUG: need to rename files in specific order; otherwise may get overwr…

…itten
spatialtopology · Sep 1, 2024 · 8572625 · 8572625
1 parent ab959d2
commit 8572625
Showing 1 changed file with 13 additions and 14 deletions.
diff --git a/spacetop_prep/datalad/rename_sub-0075_ses-01_task-social.sh b/spacetop_prep/datalad/rename_sub-0075_ses-01_task-social.sh
@@ -9,23 +9,22 @@ SUBPATH="/Users/h/Documents/projects_local/1076_spacetop/sub-0075/ses-01/func"
 PATTERN="sub-0075_ses-01_task-social_acq-mb8_run"
 
 # Rename files
-$RENAME_FUNC "${SUBPATH}/${PATTERN}-01_bold.json" "${SUBPATH}/${PATTERN}-02_bold.json"
-$RENAME_FUNC "${SUBPATH}/${PATTERN}-01_bold.nii.gz" "${SUBPATH}/${PATTERN}-02_bold.nii.gz"
-$RENAME_FUNC "${SUBPATH}/${PATTERN}-01_sbref.json" "${SUBPATH}/${PATTERN}-02_sbref.json"
-$RENAME_FUNC "${SUBPATH}/${PATTERN}-01_sbref.nii.gz" "${SUBPATH}/${PATTERN}-02_sbref.nii.gz"
-
-$RENAME_FUNC "${SUBPATH}/${PATTERN}-02_bold.json" "${SUBPATH}/${PATTERN}-03_bold.json"
-$RENAME_FUNC "${SUBPATH}/${PATTERN}-02_bold.nii.gz" "${SUBPATH}/${PATTERN}-03_bold.nii.gz"
-$RENAME_FUNC "${SUBPATH}/${PATTERN}-02_sbref.json" "${SUBPATH}/${PATTERN}-03_sbref.json"
-$RENAME_FUNC "${SUBPATH}/${PATTERN}-02_sbref.nii.gz" "${SUBPATH}/${PATTERN}-03_sbref.nii.gz"
+$RENAME_FUNC "${SUBPATH}/${PATTERN}-04_bold.json" "${SUBPATH}/${PATTERN}-06_bold.json"
+$RENAME_FUNC "${SUBPATH}/${PATTERN}-04_bold.nii.gz" "${SUBPATH}/${PATTERN}-06_bold.nii.gz"
+$RENAME_FUNC "${SUBPATH}/${PATTERN}-04_sbref.json" "${SUBPATH}/${PATTERN}-06_sbref.json"
+$RENAME_FUNC "${SUBPATH}/${PATTERN}-04_sbref.nii.gz" "${SUBPATH}/${PATTERN}-06_sbref.nii.gz"
 
 $RENAME_FUNC "${SUBPATH}/${PATTERN}-03_bold.json" "${SUBPATH}/${PATTERN}-04_bold.json"
 $RENAME_FUNC "${SUBPATH}/${PATTERN}-03_bold.nii.gz" "${SUBPATH}/${PATTERN}-04_bold.nii.gz"
 $RENAME_FUNC "${SUBPATH}/${PATTERN}-03_sbref.json" "${SUBPATH}/${PATTERN}-04_sbref.json"
 $RENAME_FUNC "${SUBPATH}/${PATTERN}-03_sbref.nii.gz" "${SUBPATH}/${PATTERN}-04_sbref.nii.gz"
 
-$RENAME_FUNC "${SUBPATH}/${PATTERN}-04_bold.json" "${SUBPATH}/${PATTERN}-06_bold.json"
-$RENAME_FUNC "${SUBPATH}/${PATTERN}-04_bold.nii.gz" "${SUBPATH}/${PATTERN}-06_bold.nii.gz"
-$RENAME_FUNC "${SUBPATH}/${PATTERN}-04_sbref.json" "${SUBPATH}/${PATTERN}-06_sbref.json"
-$RENAME_FUNC "${SUBPATH}/${PATTERN}-04_sbref.nii.gz" "${SUBPATH}/${PATTERN}-06_sbref.nii.gz"
-# The run-06 files do not need renaming
+$RENAME_FUNC "${SUBPATH}/${PATTERN}-02_bold.json" "${SUBPATH}/${PATTERN}-03_bold.json"
+$RENAME_FUNC "${SUBPATH}/${PATTERN}-02_bold.nii.gz" "${SUBPATH}/${PATTERN}-03_bold.nii.gz"
+$RENAME_FUNC "${SUBPATH}/${PATTERN}-02_sbref.json" "${SUBPATH}/${PATTERN}-03_sbref.json"
+$RENAME_FUNC "${SUBPATH}/${PATTERN}-02_sbref.nii.gz" "${SUBPATH}/${PATTERN}-03_sbref.nii.gz"
+
+$RENAME_FUNC "${SUBPATH}/${PATTERN}-01_bold.json" "${SUBPATH}/${PATTERN}-02_bold.json"
+$RENAME_FUNC "${SUBPATH}/${PATTERN}-01_bold.nii.gz" "${SUBPATH}/${PATTERN}-02_bold.nii.gz"
+$RENAME_FUNC "${SUBPATH}/${PATTERN}-01_sbref.json" "${SUBPATH}/${PATTERN}-02_sbref.json"
+$RENAME_FUNC "${SUBPATH}/${PATTERN}-01_sbref.nii.gz" "${SUBPATH}/${PATTERN}-02_sbref.nii.gz"