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Miking98 authored Dec 11, 2023
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Expand Up @@ -32,24 +32,18 @@ <h1 class="mt-0">EHRSHOT</h1>
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GitHub
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<a class="btn btn-primary btn-md px-4 mb-2" href="https://huggingface.co/StanfordShahLab/clmbr-t-base" target="_blank" role="button">
EHR Foundation Model
</a>
<!-- <a class="btn btn-primary btn-md px-4 mb-2" href="https://stanfordaimi.azurewebsites.net/datasets/54c5d2a1-ef39-489e-b5f8-8f9e27e9750b" target="_blank" role="button">
Dataset (TBD)
</a>
<a class="btn btn-primary btn-md px-4 mb-2" href="https://stanfordaimi.azurewebsites.net/datasets/54c5d2a1-ef39-489e-b5f8-8f9e27e9750b" target="_blank" role="button">
EHR Foundation Model (TBD)
</a> -->
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<a class="btn btn-secondary btn-md px-4 mb-2 disabled" role="button">
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Dataset (TBD)
</a>
<a class="btn btn-secondary btn-md px-4 mb-2 disabled" role="button">
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EHR Foundation Model (TBD)
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Expand Down Expand Up @@ -96,7 +90,7 @@ <h2 class="mt-3 mb-1">
</li>
<li>
We release the full weights of <strong>CLMBR-T-base, a 141M parameter clinical foundation model</strong> pretrained on the
structured EHR data of <strong>2.57M patients.</strong> We are one of the first to fully release such a model
structured EHR data of <strong>2.57M patients.</strong> We are one of the first to <a href="https://huggingface.co/StanfordShahLab/clmbr-t-base">fully release such a model</a>
for coded EHR data; in contrast, most prior models released for clinical data (e.g. GatorTron,
ClinicalBERT) only work with unstructured text and cannot process the rich, structured data
within an EHR. We provide an end-to-end pipeline for the community to validate and build
Expand All @@ -107,7 +101,7 @@ <h2 class="mt-3 mb-1">
such as sample efficiency and task adaptation.
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</ol>
Our model and dataset are available via a research data use agreement
Our <a href="https://huggingface.co/StanfordShahLab/clmbr-t-base">model is available at this link</a>, and our dataset will become available via a research data use agreement
<a href="https://stanfordaimi.azurewebsites.net/" target="_blank">at this link</a>.
Code to reproduce our results is available <a href="https://github.com/som-shahlab/ehrshot-benchmark" target="_blank">at this link</a>.
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Expand Down Expand Up @@ -310,4 +304,4 @@ <h2>Citation</h2>
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