Update DOI, add links and citation

README.md

@@ -4,7 +4,7 @@
 phys2bids
 =========
 
-[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.3586045.svg)](https://doi.org/10.5281/zenodo.3586045)
+[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.3653153.svg)](https://doi.org/10.5281/zenodo.3653153)
 [![Build Status](https://travis-ci.org/physiopy/phys2bids.svg?branch=master)](https://travis-ci.org/physiopy/phys2bids)
 [![Join the chat at https://gitter.im/phys2bids/community](https://badges.gitter.im/phys2bids/community.svg)](https://gitter.im/phys2bids/community?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge)
 [![Documentation Status](https://readthedocs.org/projects/phys2bids/badge/?version=latest)](https://phys2bids.readthedocs.io/en/latest/?badge=latest)
@@ -14,18 +14,23 @@ phys2bids
 [![All Contributors](https://img.shields.io/badge/all_contributors-11-orange.svg?style=flat)](#contributors-)
 <!-- ALL-CONTRIBUTORS-BADGE:END -->
 
-Phys2bids is a python3 library meant to format physiological files in BIDS.
+``phys2bids`` is a python3 library meant to format physiological files in BIDS.
 It was born for AcqKnowledge files (BIOPAC), and at the moment it supports
 ``.acq`` files as well as ``.txt`` files obtained by labchart
 (ADInstruments).
 It doesn't support physiological files recorded with the MRI, as you can find a software for it [here](https://github.com/tarrlab/physio2bids).
 
+If you use ``phy2bids`` in your work, please cite it with the zenodo DOI as:
+
+>The phys2bids contributors, Daniel Alcalá, Apoorva Ayyagari, Molly Bright, César Caballero-Gaudes, Vicente Ferrer Gallardo, Soichi Hayashi, Ross Markello, Stefano Moia, Rachael Stickland, Eneko Uruñuela, & Kristina Zvolanek (2020, February 6). physiopy/phys2bids: BIDS formatting of physiological recordings v1.3.0-beta (Version v1.3.0-beta). Zenodo. http://doi.org/10.5281/zenodo.3653153
+
 [Read the latest documentation](https://phys2bids.readthedocs.io/en/latest/) for more information on phys2bids!
 
 Shortcuts:
 - [Requirements](https://phys2bids.readthedocs.io/en/latest/installation.html#requirements)
 - [Installation](https://phys2bids.readthedocs.io/en/latest/installation.html#linux-and-mac-installation)
 - [Usage](https://phys2bids.readthedocs.io/en/latest/cli.html)
+- [How to use phys2bids](https://phys2bids.readthedocs.io/en/latest/howto.html)
 - [Contributing to phys2bids](https://phys2bids.readthedocs.io/en/latest/contributing.html)
 - [Developer installation](https://phys2bids.readthedocs.io/en/latest/contributing.html#linux-and-mac-developer-installation)
 - [**Contributor guide**](https://phys2bids.readthedocs.io/en/latest/contributorfile.html)

docs/index.rst

@@ -3,16 +3,31 @@ phys2bids
 =========
 
 .. image:: _static/phys2bids_logo1280×640.png
-   :alt: phys2bids logo
-   :align: center
+    :alt: phys2bids logo
+    :align: center
 
-.. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.3586045.svg
-   :target: https://doi.org/10.5281/zenodo.3586045
+.. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.3653153.svg
+    :target: https://doi.org/10.5281/zenodo.3653153
+    :alt: DOI
+
+.. image:: https://travis-ci.org/physiopy/phys2bids.svg?branch=master
+    :target: https://travis-ci.org/physiopy/phys2bids
+    :alt: Build status
 
 .. image:: https://badges.gitter.im/phys2bids/community.svg
-   :target: https://badges.gitter.im/phys2bids/community.svg)](https://gitter.im/phys2bids/community?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge
+    :target: https://badges.gitter.im/phys2bids/community.svg)](https://gitter.im/phys2bids/community?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge
+    :alt: Join the chat at https://gitter.im/phys2bids/community
+
+.. image:: https://readthedocs.org/projects/phys2bids/badge/?version=latest
+    :target: https://phys2bids.readthedocs.io/en/latest/?badge=latest
+    :alt: Documentation Status
+
+.. image:: https://codecov.io/gh/physiopy/phys2bids/branch/master/graph/badge.svg
+    :target: https://codecov.io/gh/physiopy/phys2bids
+    :alt: codecov
+
 
-Phys2bids is a python3 library meant to format physiological files in BIDS.
+``phys2bids`` is a python3 library meant to format physiological files in BIDS.
 It was born for AcqKnowledge files (BIOPAC), and at the moment it supports
 ``.acq`` files as well as ``.txt`` files obtained by labchart
 (ADInstruments).
@@ -21,6 +36,14 @@ It doesn't support physiological files recorded with the MRI, as you can find a
 **The project is currently under development**.
 Any suggestion/bug report is welcome! Feel free to open an issue.
 
+Citing ``phys2bids``
+--------------------
+
+If you use ``phy2bids``, please cite it using the Zenodo DOI as::
+
+    The phys2bids contributors, Daniel Alcalá, Apoorva Ayyagari, Molly Bright, César Caballero-Gaudes, Vicente Ferrer Gallardo, Soichi Hayashi, Ross Markello, Stefano Moia, Rachael Stickland, Eneko Uruñuela, & Kristina Zvolanek (2020, February 6). physiopy/phys2bids: BIDS formatting of physiological recordings v1.3.0-beta (Version v1.3.0-beta). Zenodo. http://doi.org/10.5281/zenodo.3653153
+
+
 Contents
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