Merge pull request #249 from smithlabcode/updating-abismal-submodule

Updating the abismal submodule for changes related to paired-end ambiguity
smithlabcode · Oct 28, 2024 · 6df5926 · 6df5926
2 parents f2fe044 + 0f6dae0
commit 6df5926
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Showing 2 changed files with 17 additions and 17 deletions.
diff --git a/data/md5sum.txt b/data/md5sum.txt
@@ -1,24 +1,24 @@
 ae05a28de5643a512386e767b3aa963a  tests/araTha1_simulated.hypermr
 0048de3fc412cb12ec2e070c8151f86f  tests/methylome_ab.diff
 86ca23015535cf3295c0da3587a95f22  tests/radmeth_test_output.txt
-6d513eed25f5c3da87252d8f6f816246  tests/reads.bsrate
-8dfe79399d873da3d1749eaabf7581e2  tests/reads.counts
-961b0671a349e2ad8041e0807393bf78  tests/reads.counts.select
-af22e5468fd6614c611646cbc675542f  tests/reads.counts.sym
-b38d571baaf2bc16646dbd14a7edb770  tests/reads.epiread
-8edab98b1be4411820e2f130aa6ba6b9  tests/reads.fmt.srt.sam
-af8b97ef25af8a16ced1537ca4a74d07  tests/reads.hmr
-52d44c4c1d6891b45741f573f51e67cd  tests/reads.levels
-916fe07a1d03449b65dfc1458d7c1c40  tests/reads.mstats
-1aecbb2b12bd867405118eae42de6743  tests/reads.ustats
+75777c209bf820ab700801d87a0a3615  tests/reads.bsrate
+e73facd597c3b903cbfe29afa9f58371  tests/reads.counts
+56575da7d3af9b696258512142903d1e  tests/reads.counts.select
+34bf6331c3e6c59fd8709fe112960ec4  tests/reads.counts.sym
+0f72560aa101e85679783a1ecaf80615  tests/reads.epiread
+9dbd476424d48a8d0f043dfc00af0d23  tests/reads.fmt.srt.sam
+4085cc74b003a918b4a4743fca7922a4  tests/reads.hmr
+5c6fbbc6e565f23afa4f597f2483acb0  tests/reads.levels
+a389e4ee1687895517b0b0d26e9338ee  tests/reads.mstats
+d8856f9731af76b8a4ab3cc7d667cdb2  tests/reads.ustats
 bcbf01be810cbf4051292813eb6b9225  tests/tRex1.idx
-7c84dafb85252a04a45704da71eba7c4  tests/tRex1_promoters.roi.bed
+c0951c0682abfb4fb6383c94b96c84cf  tests/tRex1_promoters.roi.bed
 ec6a686617cad31e9f7a37a3d378e6ed  tests/two_epialleles.states
 93e38b20d162062a5d147c4290095a13  tests/mlml.out
 d947fe3d61ef7b1564558a69608f0e64  tests/methylome.pmd
 d41d8cd98f00b204e9800998ecf8427e  tests/two_epialleles.amr
-fec572ada903add94dda1a01a3da9167  tests/reads.sam
-e74154fedadbc365d8e0a228d6cfa6bb  tests/reads.fmt.sam
-414c2e3aee2c154565f5ee44192ab3a8  tests/reads.fmt.srt.uniq.sam
-c56171d4902381f2ef19cccdfe34f0be  tests/reads.xcounts
-598f2a6ae5d843d6e9acfb611c747b53  tests/reads.unxcounts
+d6c983396860541a29b730e4acd0ef88  tests/reads.sam
+8c2d3b41619c0978e703ad78aae94434  tests/reads.fmt.sam
+1251050c362589319ca65151708ff998  tests/reads.fmt.srt.uniq.sam
+534ed1d8320e4b250c6d675bba23fac9  tests/reads.xcounts
+838e61c5a3155db8075eeeec53d25efa  tests/reads.unxcounts
diff --git a/src/abismal b/src/abismal
+15 −15		data/md5sum.txt
+146 −83		src/abismal.cpp
+24 −17		src/abismalidx.cpp
+250 −214		src/simreads.cpp