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singlesp · Oct 14, 2021 · 62e0483 · 62e0483
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commit 62e0483
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Showing 15 changed files with 15 additions and 15 deletions.
diff --git a/E_corrs.m b/E_corrs.m
@@ -7,7 +7,7 @@
 
 
 %%
-split='psilo' 
+split='main' 
 load(fullfile(['data/',split,'.mat']))
 numClusters = 4;
 

diff --git a/T_sweep_sps.m b/T_sweep_sps.m
@@ -12,7 +12,7 @@
 
 %% set inputs
 numClusters = 4;
-split='psilo' 
+split='main' 
 load(fullfile(['data/',split,'.mat']))
 
 

diff --git a/ami_calc.m b/ami_calc.m
@@ -5,7 +5,7 @@
 basedir = '/Users/sps253/Documents/energy_landscape';
 cd(basedir);
 
-split = 'psilo'
+split = 'main'
 
 load(fullfile(['data/',split,'.mat']))
 

diff --git a/complexity_measures.m b/complexity_measures.m
@@ -8,7 +8,7 @@
 savedir = fullfile(basedir,'results','example');mkdir(savedir);	
 %% set inputs
 
-split='psilo' 
+split='main' 
 load(fullfile(['data/',split,'.mat']))
 numClusters = 4;
 

diff --git a/countclusters.m b/countclusters.m
@@ -7,7 +7,7 @@
 
 %% set inputs
 
-split='psilo'
+split='main'
 load(fullfile(['data/',split,'.mat']))
 savedir = fullfile(basedir,'results','example');mkdir(savedir);		% set save directory
 

diff --git a/elbow_sps.m b/elbow_sps.m
@@ -9,7 +9,7 @@
 basedir = '/Users/sps253/Documents/energy_landscape';
 cd(basedir);
 
-split = 'psilo'
+split = 'main'
 
 savedir = fullfile(basedir,'results','example');mkdir(savedir);
 load(fullfile(basedir,['data/',split,'.mat'])) % make sure this file matches the split you want to run below

diff --git a/m5HTcomparisons.m b/m5HTcomparisons.m
@@ -5,7 +5,7 @@
 
 %% set inputs
 numClusters = 4;
-split='psilo' 
+split='main' 
 load(fullfile(['data/',split,'.mat']))
 
 T = 0.001  % set time scale parameters based on values from paper

diff --git a/plotcentroidsSPS.m b/plotcentroidsSPS.m
@@ -9,7 +9,7 @@
 %% plot 
 
 numClusters = 4;
-split='psilo' 
+split='main' 
 
 load(fullfile(savedir,['Partition_bp',num2str(split),'_k',num2str(numClusters),'.mat']))
 

diff --git a/repeatkmeans_sps.m b/repeatkmeans_sps.m
@@ -6,7 +6,7 @@
 
 %% load data
 
-split = 'psilo' %%<- options: main, gsr, sch, music, psilo
+split = 'main' %%<- options: main, gsr, sch, music, psilo
 
 
 load(fullfile(['data/',split,'.mat']))

diff --git a/si_scripts/energy_as_increasing_k.m b/si_scripts/energy_as_increasing_k.m
@@ -28,7 +28,7 @@
 %% load partitions from elbow plot
 
 maxk = round(sqrt(TR)) -1; %k^2 must be less than TR to capture all transitions
-k_rng=2:14;
+k_rng=2:maxk;
 
 C_sub = [repmat([1 0 0],nsubjs,1); repmat([0 0 0],nsubjs,1)];
 C_avg = [[1 0 0];[0 0 0]];

diff --git a/spin_receptor_map.m b/spin_receptor_map.m
@@ -8,7 +8,7 @@
 savedir = fullfile(basedir,'results','example');mkdir(savedir);		% set save directory
 
 %%
-split='psilo' 
+split='main' 
 load(fullfile(['data/',split,'.mat']))
 
 numClusters=4; T=0.001; 

diff --git a/subcentroids.m b/subcentroids.m
@@ -8,7 +8,7 @@
 %% load BOLD data
 
 
-split='psilo'
+split='main'
 load(fullfile(['data/',split,'.mat']))
 
 numClusters=4;

diff --git a/subj_energy.m b/subj_energy.m
@@ -10,7 +10,7 @@
 T = 0.001 % set time scale parameters based on values from T_sweep_sps.m
 
 numClusters=4;
-split='psilo'
+split='main'
 load(fullfile(['data/',split,'.mat']))
 
 load(['Partition_bp',num2str(split),'_k',num2str(numClusters),'.mat'],'partition','centroids','clusterNames'); %make sure file matches centroids you want to initialize from

diff --git a/systems_plot_sps.m b/systems_plot_sps.m
@@ -5,7 +5,7 @@
 addpath(genpath('code'))
 %% set inputs
 numClusters = 4;
-split='psilo'
+split='main'
 
 savedir = fullfile(basedir,'results','example');mkdir(savedir);		% set save directory
 load(fullfile(savedir,['Partition_bp',num2str(split),'_k',num2str(numClusters),'.mat']))

diff --git a/transProbs.m b/transProbs.m
@@ -6,7 +6,7 @@
 
 %% set inputs
 numClusters = 4;
-split='psilo'
+split='main'
 load(fullfile(['data/',split,'.mat']))
 savedir = fullfile(basedir,'results','example');mkdir(savedir);		% set save directory
 load(fullfile(savedir,['Partition_bp',num2str(split),'_k',num2str(numClusters),'.mat']))