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sib-swiss · Feb 9, 2023 · ee85a2b · ee85a2b
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diff --git a/docs/day4.md b/docs/day4.md
@@ -108,8 +108,10 @@ We will use the GEOquery package to retrieve the data and platform annotation in
 
 The GEOquery package is available from Bioconductor, and can be installed in the following way: 
 ```r
-source("https://bioconductor.org/biocLite.R") 
-biocLite("GEOquery")  
+if (!require("BiocManager", quietly = TRUE))
+    install.packages("BiocManager")
+
+BiocManager::install("GEOquery") 
 ```
 And the data retrieved like this and then have a look at the downloaded data :
 ```r

diff --git a/docs/links.md b/docs/links.md
@@ -3,3 +3,7 @@ https://www.statlearning.com/, a book to be downloaded to learn statistics and a
 
 https://intro2r.com/whoarewe.html, an online book that nicely flows you through R, include also how to do a ggplot
 
+the genomics book containing a nice chapter on interaction : http://genomicsclass.github.io/book/, where data comes from that paper : https://www.jstor.org/stable/48576004.
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Original file line number	Diff line number	Diff line change
Expand Up		@@ -3,3 +3,7 @@ https://www.statlearning.com/, a book to be downloaded to learn statistics and a

		https://intro2r.com/whoarewe.html, an online book that nicely flows you through R, include also how to do a ggplot

		the genomics book containing a nice chapter on interaction : http://genomicsclass.github.io/book/, where data comes from that paper : https://www.jstor.org/stable/48576004.