Read agglomeration threshold directly from the parameter file #177
Annotations
1 error and 22 warnings
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buildx failed with: ERROR: failed to solve: process "/bin/sh -c savedAptMark=\"$(apt-mark showmanual)\" && apt-get update -y && apt-get install -y --no-install-recommends ca-certificates curl build-essential cmake ninja-build pkg-config zstd parallel coreutils libboost-system-dev libboost-iostreams-dev libjemalloc-dev git libtbb-dev && mkdir -p /opt && curl -L -o ~/miniconda.sh ${MINICONDA_URL} && chmod +x ~/miniconda.sh && ~/miniconda.sh -b -p ${MINICONDA_PATH} && rm ~/miniconda.sh && conda update conda && conda install nomkl && conda install -y numpy=1.22.4 scipy cryptography redis-py boto3 networkx gevent pillow gsutil s5cmd google-crc32c pysimdjson zstandard && find ${MINICONDA_PATH} -follow -type f -name '*.a' -delete && find ${MINICONDA_PATH} -follow -type f -name '*.js.map' -delete && conda clean -yaf && PYTHON_VERSION=\"$(python --version | cut -d \" \" -f 2 | cut -d \".\" -f 1-2)\" && pip install --no-cache-dir -U pip && pip install --no-cache-dir -U --compile --global-option=build git+https://github.com/seung-lab/chunk_iterator#egg=chunk-iterator && pip install --no-cache-dir -U cloud-volume && pip install --no-cache-dir -U cloud-files==4.21.1 && cd ${SEG_HOME} && git clone --depth 1 https://github.com/abseil/abseil-cpp.git && cd abseil-cpp && mkdir build && cd build && cmake .. -G Ninja -DCMAKE_INSTALL_PREFIX=${SEG_HOME}/abseil -DABSL_BUILD_TESTING=OFF -DABSL_PROPAGATE_CXX_STD=ON -DCMAKE_BUILD_TYPE=Release && cmake --build . --target install -v && cd ${SEG_HOME} && rm -rf abseil-cpp && git clone --depth 1 --branch v2.1.2 https://github.com/microsoft/mimalloc.git && cd mimalloc && mkdir build && cd build && cmake .. -G Ninja -DMI_INSTALL_TOPLEVEL=ON -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=Release && cmake --build . --target install -v && cd ${SEG_HOME} && rm -rf mimalloc && echo \"[GoogleCompute]\\nservice_account = default\" > /etc/boto.cfg && mkdir -p ${SEG_HOME}/build && cd ${SEG_HOME}/build && cmake .. -G Ninja -DCMAKE_PREFIX_PATH=${SEG_HOME}/abseil -DCMAKE_BUILD_TYPE=Release -DEXTRACT_SIZE=ON && cmake --build . -v && rm -rf ${SEG_HOME}/abseil && apt-mark auto '.*' > /dev/null && apt-mark manual $savedAptMark zstd parallel coreutils libtbb2 libjemalloc2 && find ${SEG_HOME}/build -type f -executable -exec ldd '{}' ';' | awk '/=>/ { print $(NF-1) }' | sed 's/^\\///g' | sort -u | xargs -r dpkg-query --search | cut -d: -f1 | sort -u | xargs -r apt-mark manual && find ${MINICONDA_PATH} -depth \\( \\( -type f -a \\( -name '*.pyc' -o -name '*.pyo' \\) \\) \\) -exec rm -rf '{}' + && apt-get purge -y --auto-remove -o APT::AutoRemove::RecommendsImportant=false && rm -rf /root/.cache/pip/* /var/lib/apt/lists/* /tmp/* /var/tmp/* /usr/share/man /usr/share/doc /usr/share/doc-base" did not complete successfully: exit code: 1
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Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, docker/metadata-action@v3, docker/login-action@v1, docker/setup-buildx-action@v1, docker/build-push-action@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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The following actions uses node12 which is deprecated and will be forced to run on node16: docker/metadata-action@v3, docker/login-action@v1, docker/setup-buildx-action@v1, docker/build-push-action@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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