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Update README.md: conda not available #867

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Feb 10, 2025
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Update README.md: conda not available #867

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e980d33
Update README.md: conda not available
LucaMarconato Feb 10, 2025
0238d8a
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Feb 10, 2025
fd2b890
add update on conda in install docs
LucaMarconato Feb 10, 2025
ec7bca6
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Feb 10, 2025
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3 changes: 2 additions & 1 deletion README.md
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Expand Up @@ -54,7 +54,8 @@ Check out the docs for more complete [installation instructions](https://spatial
pip install "spatialdata[extra]"
```

or via conda:
~~or via conda:~~
Update Feb 2025: `spatialdata` cannot be currently be installed via `conda` because some dependencies of our dependencies are not updated in `conda-forge` and we are still waiting for an update. Please install from `pip`; the latest versions of the `spatialdata` libraries are always available via `PyPI`.

```bash
mamba install -c conda-forge spatialdata napari-spatialdata spatialdata-io spatialdata-plot
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6 changes: 4 additions & 2 deletions docs/installation.md
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Expand Up @@ -68,11 +68,13 @@ You can install the `spatialdata`, `spatialdata-io`, `spatialdata-plot` and `nap
mamba install -c conda-forge spatialdata spatialdata-io spatialdata-plot napari-spatialdata
```

Note: currently (Jan 2025), due to particular versions being unavailable on `conda-forge` for some dependent packages, the latest versions of the packages of the `SpatialData` ecosystem are not available on `conda-forge`. We are working on fixing this issue; please check the latest versions available on the channel.
Update: currently (Feb 2025), due to particular versions being unavailable on `conda-forge` for some (dependencies of our) dependencies, the latest versions of the packages of the `SpatialData` ecosystem are not available on `conda-forge`. We are waiting for the availability to be unlocked. The latest versions are always available via PyPI.

## Docker

A `Dockerfile` is available in the repository; the image that can be built from it contains `spatialdata` (with `torch`), `spatialdata-io` and `spatialdata-plot` (not `napari-spatialdata`).
## Docker

A `Dockerfile` is available in the repository; the image that can be built from it contains `spatialdata` (with `torch`), `spatialdata-io` and `spatialdata-plot` (not `napari-spatialdata`)'; the libaries are installed from PyPI.

To build the image, run:

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