sciview - interactive visualisation in vr for fiji & imagej2

SciView is an ImageJ/FIJI plugin for 3D visualization of images and meshes. It uses scenery as a rendering backend and supports rendering to VR headsets via OpenVR.

sciview running the Game of Life 3D demo (see Demo > Game of Life 3D).

Documentation is being developed.

Adding to Fiji

In Fiji, go to Help -> Update and activate the SciView update site. In case you need to add it manually, the address is https://sites.imagej.net/SciView.

Note you can access the latest version of SciView (as reflected by the master branch of this repository) by adding this update site to ImageJ manually:
https://sites.imagej.net/SciView-Unstable/

Developers

Kyle Harrington, University of Idaho & Ulrik Guenther, MPI-CBG

Contributors

• Curtis Rueden (University of Wisconsin, Madison)
• Aryaman Gupta (MPI-CBG)
• Tobias Pietzsch (MPI-CBG)
• Robert Haase (MPI-CBG)
• Jan Eglinger (FMI Basel)
• Stephan Saalfeld (HHMI Janelia Farm)

Citation

In case you use sciview or scenery in a scientific publication, please cite this paper:

• Ulrik Günther, Tobias Pietzsch, Aryaman Gupta, Kyle I.S. Harrington, Pavel Tomancak, Stefan Gumhold, and Ivo F. Sbalzarini: scenery — Flexible Virtual Reality Visualisation on the Java VM. IEEE VIS 2019 (accepted, arXiv:1906.06726).

Resources

• Media/videos created with SciView

DevOps

Triggering uploads to the update site:

Add either [SV_IJ_DEPLOY_UNSTABLE] or [SV_IJ_DEPLOY_PRIMARY] to a commit message

Acknowledgements

This software contains the following 3rd party libraries:

• IntelliJ UI code, by JetBrains (licensed under the Apache Software License 2.0), see src/main/java/com/intellij
• trove4j, by the Trove4j team (licensed under the Lesser GNU Public License 3.0), see src/main/java/gnu