update amica

sccn · Jul 25, 2024 · cc38a8f · cc38a8f
1 parent 1a42c54
commit cc38a8f
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Showing 49 changed files with 1,825 additions and 101 deletions.
diff --git a/code/plugins/reformat_plugin.py b/code/plugins/reformat_plugin.py
@@ -32,6 +32,7 @@ def reformat_plugin_dir(plugin_input_dir, plugin_name, order, plugin_type='wiki'
         for file in files:
             if file.endswith('.jpg') or file.endswith('.png'):
                 shutil.copyfile(os.path.join(root, file), os.path.join(plugin_output_dir, file))
+
     # if plugin is 'imat', copy the Docs directory recursively to the output directory
     if plugin_name == 'imat':
         shutil.copytree(os.path.join(plugin_input_dir, 'Docs'), os.path.join(plugin_output_dir, 'Docs'), dirs_exist_ok=True)
@@ -57,6 +58,13 @@ def reformat_plugin_dir(plugin_input_dir, plugin_name, order, plugin_type='wiki'
 
     if plugin_type == 'wiki':
         wiki_plugin_input_dir = plugin_input_dir + '.wiki'
+
+        # copy all .jpg and .png files from wiki input to output dir
+        for root, dirs, files in os.walk(wiki_plugin_input_dir):
+            for file in files:
+                if file.endswith('.jpg') or file.endswith('.png'):
+                    shutil.copyfile(os.path.join(root, file), os.path.join(plugin_output_dir, file))
+
         for root, dirs, files in os.walk(wiki_plugin_input_dir):
             for file in files:
                 if file.endswith('.md') and not file.startswith('index') and not file.startswith('Home'):

diff --git a/code/plugins/update_plugins.py b/code/plugins/update_plugins.py
@@ -36,8 +36,8 @@ def update_repo(repo, order, plugin_type='readme'):
     # if 'github' not in current directory, create it
     if not os.path.exists('github'):
         os.makedirs('github')
-    wiki_plugins = ['SIFT', 'get_chanlocs', 'NFT', 'PACT', 'nsgportal', 'clean_rawdata']
-    readme_plugins = ['ARfitStudio', 'roiconnect', 'EEG-BIDS', 'trimOutlier', 'groupSIFT', 'nwbio', 'ICLabel', 'dipfit', 'eegstats', 'PowPowCAT', 'PACTools', 'zapline-plus', 'amica', 'fMRIb', 'relica', 'std_dipoleDensity', 'imat', 'viewprops', 'cleanline','NIMA', 'firfilt']
+    wiki_plugins = ['SIFT', 'get_chanlocs', 'NFT', 'PACT', 'nsgportal', 'clean_rawdata', 'amica']
+    readme_plugins = ['ARfitStudio', 'roiconnect', 'EEG-BIDS', 'trimOutlier', 'groupSIFT', 'nwbio', 'ICLabel', 'dipfit', 'eegstats', 'PowPowCAT', 'PACTools', 'zapline-plus', 'fMRIb', 'relica', 'std_dipoleDensity', 'imat', 'viewprops', 'cleanline','NIMA', 'firfilt']
     ordering = ['ICLabel', 'dipfit', 'EEG-BIDS', 'roiconnect', 'amica', 'cleanline', 'clean_rawdata', 'SIFT', 'zapline-plus', 'eegstats', 'trimOutlier', 'fMRIb', 'imat', 'nwbio', 'NIMA', 'PACT', 'NFT', 'PACTools', 'ARfitStudio', 'PowPowCAT', 'relica', 'std_dipoleDensity', 'viewprops', 'firfilt', 'groupSIFT', 'get_chanlocs', 'nsgportal']
 
     if len(sys.argv) == 1: