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Adapt SEraster for Seurat spatial objects #190

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zskylarli committed May 10, 2024
commit 234b0d346ba51d1c45eb624a74ac52c900aa8ad1
8 changes: 5 additions & 3 deletions DESCRIPTION
Original file line number Diff line number Diff line change
@@ -1,14 +1,15 @@
Package: SeuratWrappers
Title: Community-Provided Methods and Extensions for the Seurat Object
Version: 0.3.5
Date: 2024-04-04
Version: 0.3.6
Date: 2024-05-10
Authors@R: c(
person(given = 'Andrew', family = 'Butler', email = 'abutler@nygenome.org', role = 'aut', comment = c(ORCID = '0000-0003-3608-0463')),
person(given = "Saket", family = "Choudhary", email = "schoudhary@nygenome.org", role = "ctb", comment = c(ORCID = "0000-0001-5202-7633")),
person(given = 'David', family = 'Collins', email = 'dcollins@nygenome.org', role = 'ctb', comment = c(ORCID = '0000-0001-9243-7821')),
person(given = "Yuhan", family = "Hao", email = "yhao@nygenome.org", role = "ctb", comment = c(ORCID = "0000-0002-1810-0822")),
person(given = "Austin", family = "Hartman", email = "ahartman@nygenome.org", role = "ctb", comment = c(ORCID = "0000-0001-7278-1852")),
person(given = 'Paul', family = 'Hoffman', email = 'nygcSatijalab@nygenome.org', role = c('aut', 'cre'), comment = c(ORCID = '0000-0002-7693-8957')),
person(given = 'Skylar', family = 'Li', email = 'sli@nygenome.org', role = 'ctb', comment = c(ORCID = '0009-0002-3486-5785'))
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person(given = "Gesmira", family = "Molla", email = 'gmolla@nygenome.org', role = 'ctb', comment = c(ORCID = '0000-0002-8628-5056')),
person(given = 'Rahul', family = 'Satija', email = 'rsatija@nygenome.org', role = 'aut', comment = c(ORCID = '0000-0001-9448-8833')),
person(given = 'Tim', family = 'Stuart', email = 'tstuart@nygenome.org', role = 'aut', comment = c(ORCID = '0000-0002-3044-0897'))
@@ -29,7 +30,8 @@ Remotes: welch-lab/liger,
mojaveazure/seurat-disk,
powellgenomicslab/Nebulosa,
atakanekiz/CIPR-Package,
prabhakarlab/Banksy
prabhakarlab/Banksy,
JEFworks-Lab/SEraster
Depends:
R (>= 3.5.0)
biocViews:
2 changes: 2 additions & 0 deletions README.md
Original file line number Diff line number Diff line change
@@ -32,3 +32,5 @@ remotes::install_github('satijalab/seurat-wrappers')
| CIPR | [Using CIPR with human PBMC data](http://htmlpreview.github.io/?https://github.com/satijalab/seurat-wrappers/blob/master/docs/cipr.html) | Ekiz et. al., BMC Bioinformatics 2020 | https://github.com/atakanekiz/CIPR-Package |
| miQC | [Running miQC on Seurat objects](http://htmlpreview.github.io/?https://github.com/satijalab/seurat-wrappers/blob/master/docs/miQC.html) | Hippen et. al., bioRxiv 2021 | https://github.com/greenelab/miQC |
| tricycle | [Running estimate_cycle_position from tricycle on Seurat Objects](http://htmlpreview.github.io/?https://github.com/satijalab/seurat-wrappers/blob/master/docs/tricycle.html) | Zheng et. al., bioRxiv 2021 | https://www.bioconductor.org/packages/release/bioc/html/tricycle.html |
| BANKSY | [Running BANKSY with Seurat](https://github.com/satijalab/seurat-wrappers/blob/master/docs/banksy.md) | Singhal et al. Nature Genetics 2024 | https://github.com/prabhakarlab/Banksy |
| SEraster | - | Aihara et al., bioRxiv 2024 | https://github.com/JEFworks-Lab/SEraster/tree/main |