Merge pull request #15 from sanjaynagi/rename_notebooks-15-10-22

rename notebooks
sanjaynagi · Oct 15, 2022 · 836eb7c · 836eb7c
2 parents 13f9fb5 + 028bc58
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diff --git a/.github/workflows/github-action-AgamPrimer.yml b/.github/workflows/github-action-AgamPrimer.yml
@@ -13,6 +13,6 @@ jobs:
         python-version: '3.7'
     - run: python3 -m pip install AgamPrimer nbformat ipykernel papermill nbconvert
     - run: python -m ipykernel install --user --name AgamPrimer
-    - run: papermill notebooks/Primer-Design-in-Anopheles-gambiae.ipynb qPCR_run.ipynb -k AgamPrimer -f tests/qPCR_Params.json
-    - run: papermill notebooks/Primer-Design-in-Anopheles-gambiae.ipynb gDNA_run.ipynb -k AgamPrimer -f tests/gDNA_probe_Params.json
-    - run: papermill notebooks/Primer-Design-in-Anopheles-gambiae.ipynb probe_run.ipynb -k AgamPrimer -f tests/probe_Params.json
+    - run: papermill notebooks/AgamPrimer-long.ipynb qPCR_run.ipynb -k AgamPrimer -f tests/qPCR_Params.json
+    - run: papermill notebooks/AgamPrimer-long.ipynb gDNA_run.ipynb -k AgamPrimer -f tests/gDNA_probe_Params.json
+    - run: papermill notebooks/AgamPrimer-long.ipynb probe_run.ipynb -k AgamPrimer -f tests/probe_Params.json
diff --git a/README.md b/README.md
@@ -8,7 +8,10 @@ Primer Design in *Anopheles gambiae s.l* taking into account SNP variation in pr
 - quantitative PCR primers (cDNA, designed to span exon-exon junctions)
 - probe design
 
------------->------------>------------>------------>   [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/sanjaynagi/AgamPrimer/blob/main/notebooks/Primer-Design-in-Anopheles-gambiae.ipynb)    <------------<------------<------------<------------
+------------>     Long     ------------>   [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/sanjaynagi/AgamPrimer/blob/main/notebooks/AgamPrimer-long.ipynb)    <------------     Long    <------------
+
+
+------------>     Short     ------------>    [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/sanjaynagi/AgamPrimer/blob/main/notebooks/AgamPrimer-short.ipynb)    <------------     Short    <------------
 
 #### Release notes
 

diff --git a/.../Primer-Design-in-Anopheles-gambiae.ipynb → notebooks/AgamPrimer-long.ipynb b/.../Primer-Design-in-Anopheles-gambiae.ipynb → notebooks/AgamPrimer-long.ipynb
diff --git a/notebooks/AgamPrimer_quick_mode.ipynb → notebooks/AgamPrimer-short.ipynb b/notebooks/AgamPrimer_quick_mode.ipynb → notebooks/AgamPrimer-short.ipynb