Merge pull request #63 from sanjaynagi/update-gcs-buckets-06-01-24

update gcs buckets
sanjaynagi · Jan 6, 2025 · 82af7b6 · 82af7b6
2 parents a032845 + db8305e
commit 82af7b6
Show file tree

Hide file tree

Showing 2 changed files with 10 additions and 4 deletions.
diff --git a/AnoPrimer/utils.py b/AnoPrimer/utils.py
@@ -13,9 +13,13 @@ def retrieve_data_resource(species):
         "funestus",
     ], f"species {species} not recognised, please use 'gambiae_sl' or 'funestus'"
     if species == "gambiae_sl":
-        data_resource = malariagen_data.Ag3(url="gs://vo_agam_release/", pre=True)
+        data_resource = malariagen_data.Ag3(
+            url="gs://vo_agam_release_master_us_central1", pre=True
+        )
     elif species == "funestus":
-        data_resource = malariagen_data.Af1(url="gs://vo_afun_release/", pre=True)
+        data_resource = malariagen_data.Af1(
+            url="gs://vo_afun_release_master_us_central1", pre=True
+        )
     return data_resource
 
 
@@ -39,7 +43,9 @@ def check_my_oligo(
     print("plotting frequencies in ag3 data")
 
     fig = plot_sequence_frequencies(
-        data_resource=malariagen_data.Ag3(url="gs://vo_agam_release/", pre=True),
+        data_resource=malariagen_data.Ag3(
+            url="gs://vo_agam_release_master_us_central1", pre=True
+        ),
         region=region_span,
         sample_sets=sample_sets,
         sample_query=sample_query,

diff --git a/pyproject.toml b/pyproject.toml
@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "AnoPrimer"
-version = "2.0.6"
+version = "2.0.7"
 description = "A package to design primers in Anopheles gambiae whilst considering genetic variation with malariagen_data"
 readme = "README.md"
 documentation = "https://sanjaynagi.github.io/anoprimer/latest/"