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Lossy compression #464

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merged 53 commits into from
Sep 11, 2024
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47474bd
EXODUS: Add support for lossy compression via netCDF quantize method
gdsjaar Jun 19, 2024
62d5ee7
IOSS: Add support for lossy compression specifying NSD for netCDF qua…
gdsjaar Jun 19, 2024
a1c262e
EXODUS: Update version date
gdsjaar Jun 19, 2024
ae309c8
EXODUS: Add some error checking on nsd values
gdsjaar Jun 19, 2024
6eac93d
EXODUS: Check if Quantization supported; include in config output
gdsjaar Jun 20, 2024
b777c5f
EXODUS: Cleaning up new compression support
gdsjaar Jun 20, 2024
e697279
EXODUS: Fix error handling code
gdsjaar Jun 20, 2024
9a6f085
EXODUS: Better error checking on compression
gdsjaar Jun 20, 2024
e6a43d3
IOSS: Support for zstd compression
gdsjaar Jun 20, 2024
b3444bd
IOSS: Handle building with no netCDF-4 capability
gdsjaar Jun 20, 2024
11dfa4b
IOSS: Change gold files to netcdf-3 so work without hdf5-supported ne…
gdsjaar Jun 20, 2024
91b78e0
CI: See if can figure out intel build failure
gdsjaar Jun 25, 2024
e321ad9
CI: Fix hdf5 version warning message
gdsjaar Jun 26, 2024
b0808cb
CI: Turn on plugins; support new syntax
gdsjaar Jun 26, 2024
ebeb2ad
EXODUS: Only flush stderr if written to
gdsjaar Jun 26, 2024
0dbc0dc
Tweak compression additions
gdsjaar Jun 26, 2024
a210817
CI: Fix intel build script syntax error
gdsjaar Jun 26, 2024
00bf1af
EXODUS: Support new netCDF with changed _FillValue
gdsjaar Jun 27, 2024
6ac35c7
IOSS: Fix so latest fmt version works
gdsjaar Jul 8, 2024
59465a8
IOSS: Catalyst API 2 (#463)
tjotaha Jun 20, 2024
6c13cc2
Fix export symbols (#465)
spyridon97 Jun 25, 2024
72a485b
IOSS: Catalyst API 2 (#466)
tjotaha Jun 25, 2024
7fc0343
CI: Remove hdf5-1.8 testing
gdsjaar Jul 9, 2024
45c72f3
IOSS: Catalyst API 2 (#463)
tjotaha Jun 20, 2024
352a572
NEM_SPREAD: Add missing include file
gdsjaar Jul 9, 2024
b4c0aa4
Merge branch 'master' into lossy-compression
gdsjaar Jul 9, 2024
d581b43
CI: Enable netCDF quantize option
gdsjaar Jul 10, 2024
6d8aef9
CI: Support newest netCDF; fmt
gdsjaar Jul 10, 2024
0575dc6
Enable new compression options
gdsjaar Jul 10, 2024
ed5651d
EXODUS: Fix non-hdf5 build
gdsjaar Jul 10, 2024
a7101bb
Merge branch 'master' into lossy-compression
gdsjaar Jul 10, 2024
2f6b88b
EXODUS: Do not commit the kluge to repository
gdsjaar Jul 10, 2024
b1167f7
IOSS: See if can fix spack ci build
gdsjaar Jul 10, 2024
6128a0a
CI: Spack build should not run on PR
gdsjaar Jul 10, 2024
c3db1d3
Merge branch 'master' into lossy-compression
gdsjaar Jul 10, 2024
5dc64cf
CI: Spack build on master only [ci skip]
gdsjaar Jul 10, 2024
e89dd76
CI: Fix spack workflow syntax [ci skip]
gdsjaar Jul 11, 2024
e480167
IOSS: Add progress output to chain/face generation
gdsjaar Jun 19, 2024
067e5eb
IOSS: Reduce Face memory
gdsjaar Jun 19, 2024
bb436f0
EXODUS: Better control over exodus verbosity
gdsjaar Jul 11, 2024
4fcc3ab
EXODUS:, IOSS: Add bzip2 compression support
gdsjaar Jul 11, 2024
87affb0
Merge branch 'master' into lossy-compression
gsjaardema Jul 31, 2024
1b19e90
Merge branch 'master' into lossy-compression
gsjaardema Aug 14, 2024
15eefb2
Merge branch 'master' into lossy-compression
gsjaardema Aug 19, 2024
ed083b7
Further testing of non-lossy compression with plugins
gdsjaar Aug 19, 2024
f2926bd
CI: Update cmake-sems to work with current sems
gdsjaar Aug 20, 2024
b1798bc
Merge branch 'master' into lossy-compression
gsjaardema Aug 21, 2024
45e6e96
Merge branch 'master' into lossy-compression
gsjaardema Aug 28, 2024
f91c19a
Default netcdf should be 4.9.2
gsjaardema Sep 11, 2024
0ba77bd
Clean up copyright dates
gsjaardema Sep 11, 2024
5ec30c9
Clean up copyright dates
gsjaardema Sep 11, 2024
89f1bf1
accidentally added to pr; removed
gsjaardema Sep 11, 2024
00d68fc
Merge branch 'master' into lossy-compression
gsjaardema Sep 11, 2024
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CI: Remove hdf5-1.8 testing
gdsjaar committed Jul 9, 2024
commit 7fc03435d1bf699f8aa418c51033a92c94673caa
4 changes: 2 additions & 2 deletions .github/workflows/build_test.yml
Original file line number Diff line number Diff line change
@@ -21,7 +21,7 @@ jobs:
strategy:
matrix:
compiler: [ gnu, clang, mpi ]
hdf5: [ V18, V110, V114 ]
hdf5: [ V110, V114 ]
netcdf: [ 4.9.2 ]
cgns: [ 4.4.0 ]
steps:
@@ -62,7 +62,7 @@ jobs:
strategy:
matrix:
compiler: [ gnu, clang, mpi ]
hdf5: [ V18, V110, V114 ]
hdf5: [ V110, V114 ]
netcdf: [ 4.9.2 ]
cgns: [ 4.4.0 ]
steps: