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saketkc · Jan 22, 2024 · e8a0399 · e8a0399
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,8 +1,8 @@
 Package: covmuller
 Type: Package
 Title: A tool to model COVID19 variant prevalence using data from GISAID
-Version: 0.1.2.0006
-Date: 2024-01-20 
+Version: 0.1.2.0007
+Date: 2024-01-21
 Author: Saket Choudhary
 Maintainer: Saket Choudhary <[email protected]>
 Description: covmuller can be used to process data from GISAID and 

diff --git a/R/visualization.R b/R/visualization.R
@@ -279,10 +279,11 @@ PlotVariantPrevalenceAnimated <- function(df, title = NULL, caption = "**Source:
   anim <- the_anim + transition_reveal(Date) + view_follow(fixed_y = T, fixed_x = T)
   anim <- animate(anim,
     renderer = gifski_renderer(), height = 900, width = 1100,
-    fps = 10, duration = 12,
+    fps = 10,
+    duration = 6,
     res = 150,
     # nframes = 100,
-    rewind = F, end_pause = 10
+    rewind = F, end_pause = 5
   )
   return(anim)
 }
diff --git a/docs/404.html b/docs/404.html
diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html
diff --git a/docs/articles/Australia_animated.gif b/docs/articles/Australia_animated.gif
diff --git a/docs/articles/Australia_animated_2021.gif b/docs/articles/Australia_animated_2021.gif
diff --git a/docs/articles/Australia_animated_2023.gif b/docs/articles/Australia_animated_2023.gif
diff --git a/docs/articles/Australia_animated_2024.gif b/docs/articles/Australia_animated_2024.gif
diff --git a/docs/articles/Brazil_animated.gif b/docs/articles/Brazil_animated.gif
diff --git a/docs/articles/Brazil_animated_2021.gif b/docs/articles/Brazil_animated_2021.gif
diff --git a/docs/articles/Brazil_animated_2023.gif b/docs/articles/Brazil_animated_2023.gif
diff --git a/docs/articles/Brazil_animated_2024.gif b/docs/articles/Brazil_animated_2024.gif
diff --git a/docs/articles/Germany_animated.gif b/docs/articles/Germany_animated.gif
diff --git a/docs/articles/Germany_animated_2021.gif b/docs/articles/Germany_animated_2021.gif
diff --git a/docs/articles/Germany_animated_2023.gif b/docs/articles/Germany_animated_2023.gif
diff --git a/docs/articles/Germany_animated_2024.gif b/docs/articles/Germany_animated_2024.gif
diff --git a/docs/articles/IN_animated.gif b/docs/articles/IN_animated.gif
diff --git a/docs/articles/IN_animated_2021.gif b/docs/articles/IN_animated_2021.gif
diff --git a/docs/articles/IN_animated_2022.gif b/docs/articles/IN_animated_2022.gif
diff --git a/docs/articles/IN_animated_2023.gif b/docs/articles/IN_animated_2023.gif
diff --git a/docs/articles/IN_animated_latest.gif b/docs/articles/IN_animated_latest.gif
diff --git a/docs/articles/Introduction.html b/docs/articles/Introduction.html
diff --git a/docs/articles/NYC_animated.gif b/docs/articles/NYC_animated.gif
diff --git a/docs/articles/NYC_animated_2023.gif b/docs/articles/NYC_animated_2023.gif
diff --git a/docs/articles/NY_animated.gif b/docs/articles/NY_animated.gif
diff --git a/docs/articles/NY_animated_2023.gif b/docs/articles/NY_animated_2023.gif
diff --git a/docs/articles/Singapore_animated.gif b/docs/articles/Singapore_animated.gif
diff --git a/docs/articles/Singapore_animated_2021.gif b/docs/articles/Singapore_animated_2021.gif
diff --git a/docs/articles/Singapore_animated_2023.gif b/docs/articles/Singapore_animated_2023.gif
diff --git a/docs/articles/Singapore_animated_2024.gif b/docs/articles/Singapore_animated_2024.gif
diff --git a/docs/articles/Switzerland_animated.gif b/docs/articles/Switzerland_animated.gif
diff --git a/docs/articles/Switzerland_animated_2021.gif b/docs/articles/Switzerland_animated_2021.gif
diff --git a/docs/articles/Switzerland_animated_2023.gif b/docs/articles/Switzerland_animated_2023.gif
diff --git a/docs/articles/Switzerland_animated_2024.gif b/docs/articles/Switzerland_animated_2024.gif
diff --git a/docs/articles/USA_animated.gif b/docs/articles/USA_animated.gif
diff --git a/docs/articles/USA_animated_2021.gif b/docs/articles/USA_animated_2021.gif
diff --git a/docs/articles/USA_animated_2023.gif b/docs/articles/USA_animated_2023.gif
diff --git a/docs/articles/United_Kingdom_animated.gif b/docs/articles/United_Kingdom_animated.gif
diff --git a/docs/articles/United_Kingdom_animated_2021.gif b/docs/articles/United_Kingdom_animated_2021.gif
diff --git a/docs/articles/United_Kingdom_animated_2023.gif b/docs/articles/United_Kingdom_animated_2023.gif
diff --git a/docs/articles/United_Kingdom_animated_2024.gif b/docs/articles/United_Kingdom_animated_2024.gif
diff --git a/docs/articles/VariantAnimation-Australia.html b/docs/articles/VariantAnimation-Australia.html
diff --git a/docs/articles/VariantAnimation-Brazil.html b/docs/articles/VariantAnimation-Brazil.html
diff --git a/docs/articles/VariantAnimation-Germany.html b/docs/articles/VariantAnimation-Germany.html
diff --git a/docs/articles/VariantAnimation-India.html b/docs/articles/VariantAnimation-India.html
diff --git a/docs/articles/VariantAnimation-NYC.html b/docs/articles/VariantAnimation-NYC.html
diff --git a/docs/articles/VariantAnimation-NewYork.html b/docs/articles/VariantAnimation-NewYork.html
diff --git a/docs/articles/VariantAnimation-Singapore.html b/docs/articles/VariantAnimation-Singapore.html
diff --git a/docs/articles/VariantAnimation-Switzerland.html b/docs/articles/VariantAnimation-Switzerland.html
diff --git a/docs/articles/VariantAnimation-UK.html b/docs/articles/VariantAnimation-UK.html
diff --git a/docs/articles/VariantAnimation-USA.html b/docs/articles/VariantAnimation-USA.html
diff --git a/docs/articles/index.html b/docs/articles/index.html
diff --git a/docs/authors.html b/docs/authors.html
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/news/index.html b/docs/news/index.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -13,7 +13,7 @@ articles:
   VariantAnimation-Switzerland: VariantAnimation-Switzerland.html
   VariantAnimation-UK: VariantAnimation-UK.html
   VariantAnimation-USA: VariantAnimation-USA.html
-last_built: 2024-01-21T18:21Z
+last_built: 2024-01-21T23:09Z
 urls:
   reference: http://saket-choudhary.me/covmuller/reference
   article: http://saket-choudhary.me/covmuller/articles

diff --git a/docs/reference/CleanAmericanStates.html b/docs/reference/CleanAmericanStates.html
diff --git a/docs/reference/CleanCanadaStates.html b/docs/reference/CleanCanadaStates.html
diff --git a/docs/reference/CleanIndianStates.html b/docs/reference/CleanIndianStates.html
diff --git a/docs/reference/CleanSouthAfricanStates.html b/docs/reference/CleanSouthAfricanStates.html
diff --git a/docs/reference/CollapseLineageToVOCs.html b/docs/reference/CollapseLineageToVOCs.html
diff --git a/docs/reference/CombineSequencedCases.html b/docs/reference/CombineSequencedCases.html
diff --git a/docs/reference/CountsToPrevalence.html b/docs/reference/CountsToPrevalence.html
diff --git a/docs/reference/CovmullerTheme.html b/docs/reference/CovmullerTheme.html
diff --git a/docs/reference/FilterGISAIDIndia.html b/docs/reference/FilterGISAIDIndia.html
diff --git a/docs/reference/FixDate.html b/docs/reference/FixDate.html
diff --git a/docs/reference/FormatGISAIDMetadata.html b/docs/reference/FormatGISAIDMetadata.html
diff --git a/docs/reference/GeocodeAddress.html b/docs/reference/GeocodeAddress.html
diff --git a/docs/reference/GetFiletype.html b/docs/reference/GetFiletype.html
diff --git a/docs/reference/GetIndiaConfirmedCasesCumulative.html b/docs/reference/GetIndiaConfirmedCasesCumulative.html
diff --git a/docs/reference/GetIndiaConfirmedCasesMonthlyLong.html b/docs/reference/GetIndiaConfirmedCasesMonthlyLong.html
diff --git a/docs/reference/GetIndiaConfirmedCasesWeeklyLong.html b/docs/reference/GetIndiaConfirmedCasesWeeklyLong.html
diff --git a/docs/reference/GetIndiaDailyCasesCumulative.html b/docs/reference/GetIndiaDailyCasesCumulative.html