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rwest committed Jun 25, 2009
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solvation_predict.py to run RMG Abraham estimator for many solvent/solute combinations
python solvation_predict.py to run RMG Abraham estimator for many solvent/solute combinations

Reads in three files:
adjList.txt containing RMG-style adjacency lists of all the solutes by name
Solvent Database.csv containing Abraham's parameters for the solvents (with a header row)
Solvent-Solute List.csv containing a list of Solvent/Solute pairs that should be estimated (with a header row)
Creates one file:
Solvent-Solute-Solvation_by_RMG.csv
Solvent-Solute-Solvation_by_RMG.csv containing the same Solvent/Solute pairs with an extra column of logK values (without header row)

Requires a working RMG Abraham.class (which may be inside a .jar)
Requires a working RMG including Abraham.class (which may be inside a .jar)
which in turn needs functioning GATPFit.exe in the appropriate path (see RMG instructions)

First created by Richard West on 2009-06-23.

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