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solvation_predict.py to run RMG Abraham estimator for many solvent/solute combinations | ||
python solvation_predict.py to run RMG Abraham estimator for many solvent/solute combinations | ||
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Reads in three files: | ||
adjList.txt containing RMG-style adjacency lists of all the solutes by name | ||
Solvent Database.csv containing Abraham's parameters for the solvents (with a header row) | ||
Solvent-Solute List.csv containing a list of Solvent/Solute pairs that should be estimated (with a header row) | ||
Creates one file: | ||
Solvent-Solute-Solvation_by_RMG.csv | ||
Solvent-Solute-Solvation_by_RMG.csv containing the same Solvent/Solute pairs with an extra column of logK values (without header row) | ||
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Requires a working RMG Abraham.class (which may be inside a .jar) | ||
Requires a working RMG including Abraham.class (which may be inside a .jar) | ||
which in turn needs functioning GATPFit.exe in the appropriate path (see RMG instructions) | ||
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First created by Richard West on 2009-06-23. |