Additional tests and testdata change

- SRTM test data is packed (in rds)
- Added several tests

.gitignore

@@ -1,2 +1,12 @@
+# filesystem remnants
 .DS_Store
+
+# Large datasets for test
 /tools/largedata/
+
+# Slurm logs
+**/*.out
+**/*.error
+
+# Apptainer image file
+/containers/**/*.sif

containers/apptainer_build.sh

@@ -0,0 +1,13 @@
+#!/bin/bash
+
+#SBATCH --job-name=init-rocker
+#SBATCH --error=init-rocker.error
+#SBATCH [email protected]
+#SBATCH --mail-type=END,FAIL
+#SBATCH --ntasks=1
+#SBATCH --cpus-per-task=1
+#SBATCH --partition=highmem
+
+## apptainer
+apptainer build /ddn/gs1/home/songi2/images/rocker_base_computation.sif /ddn/gs1/home/songi2/projects/Scalable_GIS/containers/apptainer_rocker
+

containers/calc_highthroughput.sh

@@ -0,0 +1,12 @@
+#!/bin/bash
+
+#SBATCH --job-name=calc_
+#SBATCH --error=init-rocker.error
+#SBATCH [email protected]
+#SBATCH --mail-type=END,FAIL
+#SBATCH --ntasks=1
+#SBATCH --cpus-per-task=1
+#SBATCH --partition=highmem
+
+## apptainer
+apptainer exec --writable-tmpfs --mount='type=bind,source=/opt,destination=/ddn/gs1/home/songi2/projects/PrestoGP_Pesticides/input' /ddn/gs1/home/songi2/images/rocker_base_computation.sif Rscript /ddn/gs1/home/songi2/projects/PrestoGP_Pesticides/Calc_WBD.r

containers/r_scripts/install_add_package.r

@@ -0,0 +1,2 @@
+pkgs = c("igraph", "bigDM", "terra", "mapsf", "tmap", "rlang", "data.table", "tidytable", "dtplyr")
+install.packages(pkgs = pkgs)