Merge pull request #106 from ropensci/0.9.0

0.9.0

.github/workflows/test-coverage.yaml

@@ -0,0 +1,61 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+
+name: test-coverage
+
+permissions: read-all
+
+jobs:
+  test-coverage:
+    runs-on: ubuntu-latest
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::covr
+          needs: coverage
+
+      - name: Test coverage
+        run: |
+          cov <- covr::package_coverage(
+            quiet = FALSE,
+            clean = FALSE,
+            install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
+          )
+          covr::to_cobertura(cov)
+        shell: Rscript {0}
+
+      - uses: codecov/codecov-action@v4
+        with:
+          fail_ci_if_error: ${{ github.event_name != 'pull_request' && true || false }}
+          file: ./cobertura.xml
+          plugin: noop
+          disable_search: true
+          token: ${{ secrets.CODECOV_TOKEN }}
+
+      - name: Show testthat output
+        if: always()
+        run: |
+          ## --------------------------------------------------------------------
+          find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true
+        shell: bash
+
+      - name: Upload test results
+        if: failure()
+        uses: actions/upload-artifact@v4
+        with:
+          name: coverage-test-failures
+          path: ${{ runner.temp }}/package

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: chopin
 Title: Computation of Spatial Data by Hierarchical and Objective Partitioning of Inputs for Parallel Processing
-Version: 0.8.3
+Version: 0.9.0
 Authors@R: c(
     person("Insang", "Song", , "[email protected]", role = c("aut", "cre"),
            comment = c(ORCID = "0000-0001-8732-3256")),
@@ -48,6 +48,7 @@ Imports:
     sf (>= 1.0-10),
     stars (>= 0.6-0),
     terra (>= 1.7-18),
+    mirai (>= 1.3.0),
     collapse,
     lifecycle
 Suggests: 
@@ -56,7 +57,6 @@ Suggests:
     targets,
     DiagrammeR,
     future.mirai,
-    mirai,
     knitr,
     rmarkdown,
     spatstat.random,

NAMESPACE

@@ -4,9 +4,12 @@ export(extract_at)
 export(kernelfunction)
 export(par_convert_f)
 export(par_grid)
+export(par_grid_mirai)
 export(par_hierarchy)
+export(par_hierarchy_mirai)
 export(par_merge_grid)
 export(par_multirasters)
+export(par_multirasters_mirai)
 export(par_pad_balanced)
 export(par_pad_grid)
 export(par_split_list)
@@ -39,6 +42,7 @@ importFrom(igraph,mst)
 importFrom(lifecycle,deprecated)
 importFrom(methods,findFunction)
 importFrom(methods,getPackageName)
+importFrom(mirai,mirai_map)
 importFrom(rlang,"!!!")
 importFrom(rlang,inject)
 importFrom(rlang,sym)

NEWS.md

@@ -1,3 +1,7 @@
+# 0.9
+- `mirai` based `par_*` functions for parallelization
+- terra::extract mode in `extract_at()` with `terra` argument and auxiliary arguments including exact, weights, touches
+
 # 0.8
 - Bumped version from 0.7.8 to 0.8.0: improving package coverage
 - README.md: two mermaid plots are pre-generated as png files