🚧

.github/workflows/docker-gpu-image.yml

@@ -1,9 +1,9 @@
-name: GPU Image
+name: CUDA Image
 on:
   workflow_dispatch: null
   push:
     paths: 
-      - Dockerfile.cuda
+      - Dockerfile
       - environment.yml
       - install.r
 jobs:

.github/workflows/docker-image.yml

@@ -1,12 +1,10 @@
-name: GPU Image
+name: ML Image
 on:
   workflow_dispatch: null
   push:
     paths: 
       - Dockerfile
-      - rl-env.yml
-      - spatial-env.yml
-      - jupyter-ai.yml
+      - environment.yml
       - install.r
 jobs:
   build:

Dockerfile

@@ -22,9 +22,6 @@ RUN curl -s https://raw.githubusercontent.com/rocker-org/ml/refs/heads/master/in
 ## Add rstudio's binaries to path for quarto
 ENV PATH=$PATH:/usr/lib/rstudio-server/bin/quarto/bin
 
-## switch non-root users from BSPM to r-universe if no sudo 
-COPY Rprofile /usr/lib/R/etc/Rprofile.site
-
 # When run as root, install.r automagically handles any necessary apt-gets
 COPY install.r install.r
 RUN Rscript install.r

install_r.sh

@@ -48,4 +48,6 @@ ln -s /usr/lib/R/site-library/littler/examples/install2.r /usr/local/bin/install
 # usermod -a -G staff ${NB_USER}
 # echo "${NB_USER} ALL=(ALL) NOPASSWD: ALL" >> /etc/sudoers
 
-
+## switch non-root users from BSPM to r-universe if no sudo 
+wget https://raw.githubusercontent.com/rocker-org/ml/refs/heads/master/Rprofile
+mv Rprofile ${R_HOME}/etc/Rprofile.site