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Fix merging error#91

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danilexn merged 24 commits intorajewsky-lab:masterrajewsky-lab/spacemake:masterfrom danilexn:merging_issuedanilexn/spacemake:merging_issueCopy head branch name to clipboardApr 18, 2024

+181-33

Commits

Commits on Jan 18, 2024

• add tiny spatial test data

  danilexn

  committed
  6dc231e

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• no qc and prealignment stats of merged samples

  danilexn

  committed
  4f08526

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• do not require R1 and R2 in merged samples

  danilexn

  committed
  02a4473

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• support filtering of merged files in prealignment file generation

  danilexn

  committed
  bca4239

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• compute union of passed spatial pucks in main smk workflow

  danilexn

  committed
  da56deb

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• support lists of one element when updating pucks

  danilexn

  committed
  1c18a36

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• spatial puck width/height with max-min instead of max

  danilexn

  committed
  eb01f8b

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• support non-mesh puck collection in main smk

  danilexn

  committed
  5baabdb

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• throw error when adata is empty

  danilexn

  committed
  3dc82ca

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• exclude empty pucks when default matches: 0

  danilexn

  committed
  79ffb15

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• add spatial tiny test data

  danilexn

  committed
  0a10d9c

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• consolidate pucks: fix reference to puck_ids

  danilexn

  committed
  0fd785c

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Commits on Jan 24, 2024

• fix: qc not working on puck_collection when multiple samples

  danilexn

  committed
  563aa72

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Commits on Apr 17, 2024

• Merge branch 'rajewsky-lab:master' into merging_issue

  

  Daniel León Periñán

  authored
  dfa1fc5

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• remove too large spatial test data

  danilexn

  committed
  89abb7e

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• preprocess/dge avoid division by zero

  danilexn

  committed
  c297310

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• dge: fix vstack for missing mt in tiny test data

  danilexn

  committed
  d38119c

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• update test reads and spatial tiles for 1 match in 2 tiles

  danilexn

  committed
  aaa74b1

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• fixed test reads so it runs

  danilexn

  committed
  f216360

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• dge: warning when empty, set puck metrics to 1 when nan

  danilexn

  committed
  7cf1339

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• project_df: more verbosity for merge validation

  danilexn

  committed
  847c49e

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• main.smk: no exception when empty DGE, just warning

  danilexn

  committed
  bf082f0

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• bump version 0.7.5 to 0.7.6

  danilexn

  committed
  9e27e30

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• main.smk: generate qc reports when merging

  danilexn

  committed
  ac5709b

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