* create the infrastructure to make a package (setuptools/pip), uploa…

…dable to PyPI

build_instructions.txt

@@ -0,0 +1,19 @@
+# How this package was built for PyPI
+
+- installing 'build' and 'twine' via pip
+
+    `python3 -m pip install --upgrade build`
+    `python3 -m pip install --upgrade twine`
+
+- getting an API token from PyPI and placing in ~/.pypirc
+
+- in top-level (where pyptoject.toml resides) `python -m build`
+
+  This creates package files in the dists/ subdirectory
+
+- upload
+ testpypi: `python3 -m twine upload --repository testpypi dist/* `
+ live pypi: `python3 -m twine upload --repository pypi dist/* `
+
+
+

pyproject.toml

@@ -0,0 +1,6 @@
+[build-system]
+requires = [
+    "setuptools>=42",
+    "wheel"
+]
+build-backend = "setuptools.build_meta"

setup.cfg

@@ -0,0 +1,28 @@
+[metadata]
+name = spacemake
+version = 0.0.1
+author = Nikolaos Karaiskos  Tamás Sztanka-Tóth  Marvin Jens
+author_email = [email protected]
+description = A bioinformatic pipeline for the analysis of spatial transcriptomic data
+long_description = file: README.md
+long_description_content_type = text/markdown
+url = https://github.com/rajewsky-lab/spacemake
+#project_urls =
+#    Bug Tracker = https://github.com/rajewsky-lab/spacemake/issues
+# classifiers =
+#     Programming Language :: Python :: 3
+#     License :: OSI Approved :: MIT License
+#     Operating System :: OS Independent
+license = MIT
+
+[options]
+python_requires = >=3.6
+package_dir =
+    = scripts
+packages = spacemake
+
+[options.entry_points]
+console_scripts = 
+    alnstats = spacemake.alnstats:cmdline
+    preprocess = spacemake.preprocess:cmdline
+    spacemake = spacemake.smk:cmdline

setup.py

@@ -0,0 +1,4 @@
+if __name__ == "__main__":
+    from setuptools import setup
+
+    setup()