Instructions

README.md

@@ -2,13 +2,17 @@
 
 Development setup:
 
-- Clone my qupath fork https://github.com/alanocallaghan/qupath
+- Clone Alan's qupath fork https://github.com/alanocallaghan/qupath
   - If you have the main qupath repo cloned already, you could add it as a remote `git add remote alan [email protected]:alanocallaghan/qupath.git && git fetch alan`
   - If you want to make a fresh clone, then continue, the following instructions should still work
   - Switch to branch `instanseg`
     - If you added a remote, then `git checkout instanseg`
-- Clone this repo in the same directory
-- Run QuPath
-- Open extension
-- Enter the path to the model file in "Downloaded model directory" (yes, I know, but for now :))
+- Clone this repo in the same directory as qupath, eg
+  - `git clone [email protected]:qupath/qupath-extension-instanseg.git`
+  - `git clone [email protected]:qupath/qupath-extension-djl.git`
+- Enter the qupath folder `cd qupath`
+- Run QuPath using `./gradlew run`
+- Open extension (`extensions -> run instanseg`)
+- Enter the path to the model `.pt` file(s) in "Downloaded model directory"
+- Choose appropriate device/thread/tile size settings
 - Run...?