Don't select missing cores

qupath · Nov 6, 2024 · 13fbb2f · 13fbb2f
1 parent 1cacc16
commit 13fbb2f
Showing 1 changed file with 6 additions and 1 deletion.
diff --git a/src/main/java/qupath/ext/instanseg/ui/InstanSegController.java b/src/main/java/qupath/ext/instanseg/ui/InstanSegController.java
@@ -843,7 +843,12 @@ private void selectAllAnnotations() {
     @FXML
     private void selectAllTMACores() {
         var hierarchy = qupath.getImageData().getHierarchy();
-        hierarchy.getSelectionModel().setSelectedObjects(hierarchy.getTMAGrid().getTMACoreList(), null);
+        hierarchy.getSelectionModel().setSelectedObjects(
+                hierarchy
+                        .getTMAGrid().getTMACoreList()
+                        .stream().filter(core -> !core.isMissing())
+                        .toList(),
+                null);
     }
 
     private void promptToUpdateDirectory(StringProperty dirPath) {