Exlcude

qMRLab · Oct 1, 2024 · 3599d05 · 3599d05
1 parent 0634329
commit 3599d05
Showing 1 changed file with 22 additions and 77 deletions.
diff --git a/myst.yml b/myst.yml
@@ -49,16 +49,18 @@ project:
     VFA: Variable Flip Angle
   exclude:
     - README.md
+    - data/**
+    - public/**
+    - figures/**
+    - jupyter-matlab-proxy/**
   bibliography:
     - bibliography/book.bib
     - bibliography/ir.bib
-  resources:
-    - figures/2 T1 mapping/figure2-2.ipynb
   toc:
     # Auto-generated by `myst init --write-toc`
     - file: index.md
     - file: README.md
-    - title: Introduction  To QMRI
+    - title: Introduction to qMRI
       children:
         - file: 1 Introduction to qMRI/01-intro.md
         - file: 1 Introduction to qMRI/02-million_dollar.md
@@ -69,20 +71,20 @@ project:
     - title: T1   Mapping
       children:
         - file: 2 T1 Mapping/foreword.md
-        - title: Inversion   Recovery
+        - title: Inversion Recovery
           children:
             - file: 2 T1 Mapping/1-1 Inversion Recovery/01-introduction.md
             - file: 2 T1 Mapping/1-1 Inversion Recovery/02-IR_SignalModelling.md
             - file: 2 T1 Mapping/1-1 Inversion Recovery/03-IR_DataFitting.md
             - file: 2 T1 Mapping/1-1 Inversion Recovery/04-IR_BenefitsAndPitfalls.md
             - file: 2 T1 Mapping/1-1 Inversion Recovery/05-IR_OtherMethods.md
-        - title: Variable   Flip   Angle
+        - title: Variable Flip Angle
           children:
             - file: 2 T1 Mapping/1-2 Variable Flip Angle/01-Introduction.md
             - file: 2 T1 Mapping/1-2 Variable Flip Angle/02-VFA_SignalModelling.md
             - file: 2 T1 Mapping/1-2 Variable Flip Angle/03-VFA_DataFitting.md
             - file: 2 T1 Mapping/1-2 Variable Flip Angle/04-VFA_BenefitsAndPitfalls.md
-        - title: M P2 RAGE
+        - title: MP2RAGE
           children:
             - file: 2 T1 Mapping/1-3 MP2RAGE/01-Abstract.md
             - file: 2 T1 Mapping/1-3 MP2RAGE/02-SignalModelling.md
@@ -91,35 +93,35 @@ project:
     - title: T2   Mapping
       children:
         - file: 3 T2 Mapping/foreword.md
-        - title: Monoexponential   T2   Mapping
+        - title: Monoexponential T2 Mapping
           children:
             - file: 3 T2 Mapping/1 Monoexponential T2 Mapping/01-abstract.md
             - file: 3 T2 Mapping/1 Monoexponential T2 Mapping/02-SignalModelling.md
             - file: 3 T2 Mapping/1 Monoexponential T2 Mapping/03-DataFitting.md
             - file: 3 T2 Mapping/1 Monoexponential T2 Mapping/04-BenefitsAndPitfalls.md
-        - title: Multiexponential   T2   Mapping
+        - title: Multiexponential T2 Mapping
           children:
             - file: 3 T2 Mapping/2 Multiexponential T2 Mapping/01-abstract.md
             - file: 3 T2 Mapping/2 Multiexponential T2 Mapping/02-SignalModelling.md
             - file: 3 T2 Mapping/2 Multiexponential T2 Mapping/03-DataFitting.md
             - file: 3 T2 Mapping/2 Multiexponential T2 Mapping/04-Applications.md
             - file: 3 T2 Mapping/2 Multiexponential T2 Mapping/05-BenefitsPitfalls.md
-    - title: B1   Mapping
+    - title: B1 Mapping
       children:
-        - title: Actual   Flip   Angle   Imaging
+        - title: Actual Flip Angle Imaging
           children:
             - file: 4 B1 Mapping/Actual Flip Angle Imaging/01-abstract.md
             - file: 4 B1 Mapping/Actual Flip Angle Imaging/02-SignalModeling.md
             - file: 4 B1 Mapping/Actual Flip Angle Imaging/03-DataFitting.md
             - file: 4 B1 Mapping/Actual Flip Angle Imaging/04-BenefitsAndPitfalls.md
-    - title: B0   Mapping
+    - title: B0 Mapping
       children:
-        - title: B0   Inhomogeneities
+        - title: B0 Inhomogeneities
           children:
             - file: 5 B0 Mapping/1 B0 Inhomogeneities/01-abstract.md
             - file: 5 B0 Mapping/1 B0 Inhomogeneities/02-Sources.md
             - file: 5 B0 Mapping/1 B0 Inhomogeneities/03-Effects.md
-        - title: Two Echo  Phase   Difference   B0   Mapping
+        - title: Two Echo Phase Difference B0 Mapping
           children:
             - file: 5 B0 Mapping/2 Two-echo Phase Difference B0 Mapping/01-abstract.md
             - file: >-
@@ -128,12 +130,12 @@ project:
             - file: >-
                 5 B0 Mapping/2 Two-echo Phase Difference B0
                 Mapping/03-BenefitsAndPitfalls.md
-        - title: Phase   Unwrapping
+        - title: Phase Unwrapping
           children:
             - file: 5 B0 Mapping/3 Phase Unwrapping/01-abstract.md
             - file: 5 B0 Mapping/3 Phase Unwrapping/02-issues.md
             - file: 5 B0 Mapping/3 Phase Unwrapping/03-Software.md
-        - title: Advanced   B0   Mapping   Methods
+        - title: Advanced B0 Mapping Methods
           children:
             - file: 5 B0 Mapping/4 Advanced B0 Mapping Methods/01-abstract.md
             - file: 5 B0 Mapping/4 Advanced B0 Mapping Methods/02-MultiEcho.md
@@ -142,9 +144,9 @@ project:
         - title: Conclusion
           children:
             - file: 5 B0 Mapping/5 Conclusion/5 Conclusion.md
-    - title: Magnetization   Transfer   Imaging
+    - title: Magnetization Transfer Imaging
       children:
-        - title: Quantitative   Magnetization   Transfer
+        - title: Quantitative Magnetization Transfer
           children:
             - file: >-
                 6 Magnetization Transfer Imaging/1 Quantitative Magnetization
@@ -158,74 +160,17 @@ project:
             - file: >-
                 6 Magnetization Transfer Imaging/1 Quantitative Magnetization
                 Transfer/04-Summary.md
-        - title: Magnetization   Transfer   Ratio
+        - title: Magnetization Transfer Ratio
           children:
             - file: >-
                 6 Magnetization Transfer Imaging/2 Magnetization Transfer
                 Ratio/01-abstract.md
-        - title: Magnetization   Transfer   Saturation
+        - title: Magnetization Transfer Saturation
           children:
             - file: >-
                 6 Magnetization Transfer Imaging/3 Magnetization Transfer
                 Saturation/01-abstract.md
-    - title: Data
-      children:
-        - title: Qmrlab T1 Book
-          children:
-            - title: T1 Book Neurolibre
-              children:
-                - title: '01'
-                  children:
-                    - file: data/qmrlab-t1-book/t1-book-neurolibre/01/figure2p2.ipynb
-    - title: Figures
-      children:
-        - title: T1  Mapping
-          children:
-            - file: figures/2 T1 mapping/figure_2-2.ipynb
-            - file: figures/2 T1 mapping/figure_2-3.ipynb
-            - file: figures/2 T1 mapping/figure_2-4.ipynb
-            - file: figures/2 T1 mapping/figure_2-5.ipynb
-            - file: figures/2 T1 mapping/figure_2-6.ipynb
-            - file: figures/2 T1 mapping/figure_vfa2.ipynb
-            - file: figures/2 T1 mapping/figure_vfa3.ipynb
-            - file: figures/2 T1 mapping/figure_vfa4.ipynb
-            - file: figures/2 T1 mapping/figure_vfa5.ipynb
-            - file: figures/2 T1 mapping/figure_vfa6.ipynb
-            - file: figures/2 T1 mapping/figure_vfa7.ipynb
-            - file: figures/2 T1 mapping/foreword.md
-    - title: Jupyter Matlab Proxy
-      children:
-        - file: jupyter-matlab-proxy/LICENSE.md
-        - file: jupyter-matlab-proxy/Limitations.md
-        - file: jupyter-matlab-proxy/README.md
-        - file: jupyter-matlab-proxy/SECURITY.md
-        - title: Install Guides
-          children:
-            - title: Wsl2
-              children:
-                - file: jupyter-matlab-proxy/install_guides/wsl2/README.md
-        - title: Src
-          children:
-            - title: Jupyter Matlab Kernel
-              children:
-                - file: jupyter-matlab-proxy/src/jupyter_matlab_kernel/README.md
-                - title: Magics
-                  children:
-                    - file: >-
-                        jupyter-matlab-proxy/src/jupyter_matlab_kernel/magics/README.md
-            - title: Jupyter Matlab Labextension
-              children:
-                - file: jupyter-matlab-proxy/src/jupyter_matlab_labextension/README.md
-            - title: Jupyter Matlab Proxy
-              children:
-                - file: jupyter-matlab-proxy/src/jupyter_matlab_proxy/README.md
-        - title: Tests
-          children:
-            - file: jupyter-matlab-proxy/tests/README.md
-        - title: Troubleshooting
-          children:
-            - file: jupyter-matlab-proxy/troubleshooting/troubleshooting.md
-
+
 site:
   template: book-theme
   logo: public/icon.png