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fix(tests): update tolerance levels and `PRNGKey` usage for improved … #3768

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Job	Run time
lint (3.9)	4m 9s
lint (3.10)	4m 21s
lint (3.12)	5m 14s
examples (3.10)	23m 29s
test-modeling (3.9)	25m 35s
test-modeling (3.10)	28m 37s
test-inference (3.9)	31m 57s
test-inference (3.10)	34m 51s
finish	2s
	2h 38m 15s