version 1.0.2

It keeps same number of columns for all PSMs regardless of passing filter of Luciphor or not
proteomicsyates · Mar 2, 2021 · 17ff142 · 17ff142
1 parent f7e74ed
commit 17ff142
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/pom.xml b/pom.xml
@@ -10,7 +10,7 @@
 	</parent>
 	<groupId>edu.scripps.yates</groupId>
 	<artifactId>luciphor_dtaselect_integrator</artifactId>
-	<version>1.0.1</version>
+	<version>1.0.2</version>
 	<name>luciphor_dtaselect_integrator</name>
 	<description>Program that takes output from luciphor and some thresholds on its scores and integrates the results into a DTASelect-filter.txt file.</description>
 

diff --git a/...ain/java/edu/scripps/yates/luciphor_dtaselect_integrator/LuciphorDtaselectIntegrator.java b/...ain/java/edu/scripps/yates/luciphor_dtaselect_integrator/LuciphorDtaselectIntegrator.java
@@ -106,7 +106,7 @@ private void processDTASelect(Map<String, LuciphorEntry> filteredLuciphorEntries
 						final String originalSequence = split[indexByHeader.get(DTA_COL_SEQUENCE)];
 						final String sequenceToReplace = luciphorEntry.getFormattedPredictedSequence(originalSequence);
 						if (originalSequence.equals(sequenceToReplace)) {
-							fw.write(line + "\n");
+							fw.write(line + "\t\t\t\n");
 							continue;
 						}
 						// create new array of values
@@ -137,7 +137,7 @@ private void processDTASelect(Map<String, LuciphorEntry> filteredLuciphorEntries
 						numChanged++;
 						continue;
 					} else {
-						fw.write(line + "\n");
+						fw.write(line + "\t\t\t\n");
 					}
 				}
 			}