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  1. pysam pysam Public

    Forked from pysam-developers/pysam

    Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.

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    🌈 Interactive analysis of metagenomics data

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    🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results

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  5. diag_pipelines diag_pipelines Public

    Forked from metagenlab/diag_pipelines

    Pipelines dealing with high throughput sequencing data for microbiology diagnostic procedures. Documentation available at http://metagenlabdiag-pipelines.readthedocs.io/en/latest/ and Docker images…

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  6. ncbi-genome-download ncbi-genome-download Public

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    Scripts to download genomes from the NCBI FTP servers

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