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Update changelog.md
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mbaudis committed Nov 3, 2024
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Expand Up @@ -4,6 +4,16 @@ This page lists changes for the [Beacon+](http://beacon.progenetix.org/ui/)
implementation of the ["Beacon" genomics API](http://beacon-project.io), as well
as related updates for the [Progenetix](http://progenetix.org) front-end.

## 2024-11-02: Fix for missing TCGA analyses

During import of the TCGA non-CNV variants the "analysis" objects somehow got
lost although variants were imported correctly, leading to a missing association of
those variants w/ their samples during query result aggregation. Fixed for all
10007 samples by extracting the previously assigned `analysis_id` values together
with the `biosample_id` values from the variants and generating the missing analysis
objects. Now TCGA has working calls for "double hit" CNV + SNV events.


## 2024-09-10: Ongoing removal of samples from pure germline series

So far of the currently 145264 samples the Progenetix collection consisted of
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