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Merge branch 'physiopy:master' into integrate-physutils
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maestroque authored Jul 23, 2024
2 parents 9f5e162 + 8979423 commit 696d29c
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11 changes: 11 additions & 0 deletions .github/labeler.yml
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Documentation:
- changed-files:
- any-glob-to-any-file: ['docs/*', '.readthedocs.yml', 'README.md', 'LICENSE', 'MANIFEST.in']

Internal:
- changed-files:
- any-glob-to-any-file: ['.*', 'codecov.yml', 'setup.cfg', 'setup.py', 'versioneer.py', '.github/*', '.circleci/*', 'phys2denoise/_version.py', 'requirements.txt', 'pyproject.toml']

Testing:
- changed-files:
- any-glob-to-any-file: ['phys2denoise/tests/*', '.circleci/*']
17 changes: 17 additions & 0 deletions .github/workflows/auto-author-assign.yml
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name: Auto Author Assign

on:
issues:
types: [ opened, reopened ]
pull_request_target:
types: [ opened, reopened ]

permissions:
pull-requests: write
issues: write

jobs:
assign-author:
runs-on: ubuntu-latest
steps:
- uses: toshimaru/[email protected]
15 changes: 15 additions & 0 deletions .github/workflows/auto-label.yml
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name: auto-label
concurrency:
group: ${{ github.workflow }}-${{ github.event.number }}-${{ github.event.ref }}
cancel-in-progress: true
on: # yamllint disable-line rule:truthy
pull_request_target

jobs:
pr:
permissions:
contents: read
pull-requests: write
runs-on: ubuntu-latest
steps:
- uses: actions/labeler@v5
4 changes: 2 additions & 2 deletions .github/workflows/auto-release.yml
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jobs:
auto-release:
runs-on: ubuntu-20.04
runs-on: ubuntu-22.04
# Set skip ci to avoid loops
if: "!contains(github.event.head_commit.message, 'ci skip') && !contains(github.event.head_commit.message, 'skip ci')"
# Set bash as default shell for jobs
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shell: bash
steps:
- name: Checkout source
uses: actions/checkout@v3
uses: actions/checkout@v4
with:
# Fetch all history for all branches and tags
fetch-depth: 0
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33 changes: 33 additions & 0 deletions .github/workflows/python-publish.yml
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# This workflows will upload a Python Package using Twine when a release is created
# For more information see: https://help.github.com/en/actions/language-and-framework-guides/using-python-with-github-actions#publishing-to-package-registries

name: Upload Python Package

on:
release:
types: [created]

jobs:
deploy:

runs-on: ubuntu-22.04

steps:
- name: Checkout source
uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: 3.11
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install setuptools wheel twine
- name: Build and publish
env:
TWINE_USERNAME: __token__
TWINE_PASSWORD: ${{ secrets.PYPI_PASSWORD }}
run: |
python setup.py sdist bdist_wheel
twine check dist/*
twine upload dist/*
32 changes: 0 additions & 32 deletions .github/workflows/pythonpublish.yml

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28 changes: 28 additions & 0 deletions CHANGELOG.md
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# 0.4.0 (Mon Jul 15 2024)

:tada: This release contains work from a new contributor! :tada:

Thank you, Nirjal Bhurtel ([@erwinschrodinger1](https://github.com/erwinschrodinger1)), for all your work!

#### 🚀 Enhancement

- feat: Update workflows and setup ([@smoia](https://github.com/smoia))

#### ⚠️ Pushed to `master`

- int:Update more action versions ([@smoia](https://github.com/smoia))
- doc: fix changelog ([@smoia](https://github.com/smoia))

#### 🏠 Internal

- Fix matplotlib typo in requirement.txt [#50](https://github.com/physiopy/phys2denoise/pull/50) ([@erwinschrodinger1](https://github.com/erwinschrodinger1))
- Update configuration [#46](https://github.com/physiopy/phys2denoise/pull/46) ([@pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]) [@smoia](https://github.com/smoia))

#### Authors: 3

- [@pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot])
- Nirjal Bhurtel ([@erwinschrodinger1](https://github.com/erwinschrodinger1))
- Stefano Moia ([@smoia](https://github.com/smoia))

---

# 0.3.1 (Mon Aug 28 2023)

#### 🚀 Enhancement
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30 changes: 14 additions & 16 deletions README.md
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Expand Up @@ -26,22 +26,20 @@ Thanks goes to these wonderful people ([emoji key](https://allcontributors.org/d
<!-- prettier-ignore-start -->
<!-- markdownlint-disable -->
<table>
<tbody>
<tr>
<td align="center" valign="top" width="12.5%"><a href="https://github.com/CesarCaballeroGaudes"><img src="https://avatars1.githubusercontent.com/u/7611340?v=4?s=100" width="100px;" alt="Cesar Caballero Gaudes"/><br /><sub><b>Cesar Caballero Gaudes</b></sub></a><br /><a href="https://github.com/physiopy/phys2denoise/commits?author=CesarCaballeroGaudes" title="Code">💻</a> <a href="#ideas-CesarCaballeroGaudes" title="Ideas, Planning, & Feedback">🤔</a></td>
<td align="center" valign="top" width="12.5%"><a href="https://github.com/eril892"><img src="https://avatars.githubusercontent.com/u/91672536?v=4?s=100" width="100px;" alt="Raphaël Fournier"/><br /><sub><b>Raphaël Fournier</b></sub></a><br /><a href="https://github.com/physiopy/phys2denoise/commits?author=eril892" title="Code">💻</a> <a href="#userTesting-eril892" title="User Testing">📓</a> <a href="https://github.com/physiopy/phys2denoise/commits?author=eril892" title="Documentation">📖</a></td>
<td align="center" valign="top" width="12.5%"><a href="https://github.com/TomasLenc"><img src="https://avatars.githubusercontent.com/u/10827440?v=4?s=100" width="100px;" alt="Tomas Lenc"/><br /><sub><b>Tomas Lenc</b></sub></a><br /><a href="https://github.com/physiopy/phys2denoise/issues?q=author%3ATomasLenc" title="Bug reports">🐛</a> <a href="https://github.com/physiopy/phys2denoise/commits?author=TomasLenc" title="Tests">⚠️</a></td>
<td align="center" valign="top" width="12.5%"><a href="https://github.com/rzlim08"><img src="https://avatars.githubusercontent.com/u/37033997?v=4?s=100" width="100px;" alt="rzlim08"/><br /><sub><b>rzlim08</b></sub></a><br /><a href="https://github.com/physiopy/phys2denoise/commits?author=rzlim08" title="Code">💻</a> <a href="https://github.com/physiopy/phys2denoise/commits?author=rzlim08" title="Tests">⚠️</a></td>
<td align="center" valign="top" width="12.5%"><a href="http://rossmarkello.com"><img src="https://avatars0.githubusercontent.com/u/14265705?v=4?s=100" width="100px;" alt="Ross Markello"/><br /><sub><b>Ross Markello</b></sub></a><br /><a href="#infra-rmarkello" title="Infrastructure (Hosting, Build-Tools, etc)">🚇</a> <a href="#mentoring-rmarkello" title="Mentoring">🧑‍🏫</a></td>
<td align="center" valign="top" width="12.5%"><a href="https://github.com/smoia"><img src="https://avatars3.githubusercontent.com/u/35300580?v=4?s=100" width="100px;" alt="Stefano Moia"/><br /><sub><b>Stefano Moia</b></sub></a><br /><a href="#data-smoia" title="Data">🔣</a> <a href="#infra-smoia" title="Infrastructure (Hosting, Build-Tools, etc)">🚇</a> <a href="#projectManagement-smoia" title="Project Management">📆</a> <a href="https://github.com/physiopy/phys2denoise/commits?author=smoia" title="Code">💻</a> <a href="#ideas-smoia" title="Ideas, Planning, & Feedback">🤔</a> <a href="https://github.com/physiopy/phys2denoise/commits?author=smoia" title="Documentation">📖</a> <a href="#mentoring-smoia" title="Mentoring">🧑‍🏫</a></td>
<td align="center" valign="top" width="12.5%"><a href="https://github.com/AlicePatin"><img src="https://avatars.githubusercontent.com/u/44365985?v=4?s=100" width="100px;" alt="Alice Patin"/><br /><sub><b>Alice Patin</b></sub></a><br /><a href="https://github.com/physiopy/phys2denoise/commits?author=AlicePatin" title="Code">💻</a></td>
<td align="center" valign="top" width="12.5%"><a href="https://github.com/tsalo"><img src="https://avatars3.githubusercontent.com/u/8228902?v=4?s=100" width="100px;" alt="Taylor Salo"/><br /><sub><b>Taylor Salo</b></sub></a><br /><a href="https://github.com/physiopy/phys2denoise/commits?author=tsalo" title="Code">💻</a> <a href="#ideas-tsalo" title="Ideas, Planning, & Feedback">🤔</a> <a href="https://github.com/physiopy/phys2denoise/pulls?q=is%3Apr+reviewed-by%3Atsalo" title="Reviewed Pull Requests">👀</a></td>
</tr>
<tr>
<td align="center" valign="top" width="12.5%"><a href="https://github.com/ineschh"><img src="https://avatars.githubusercontent.com/u/72545702?v=4?s=100" width="100px;" alt="Inés Chavarría"/><br /><sub><b>Inés Chavarría</b></sub></a><br /><a href="#infra-ineschh" title="Infrastructure (Hosting, Build-Tools, etc)">🚇</a></td>
<td align="center" valign="top" width="12.5%"><a href="https://github.com/kristinazvolanek"><img src="https://avatars.githubusercontent.com/u/54590158?v=4?s=100" width="100px;" alt="Kristina Zvolanek"/><br /><sub><b>Kristina Zvolanek</b></sub></a><br /><a href="#infra-kristinazvolanek" title="Infrastructure (Hosting, Build-Tools, etc)">🚇</a> <a href="https://github.com/physiopy/phys2denoise/pulls?q=is%3Apr+reviewed-by%3Akristinazvolanek" title="Reviewed Pull Requests">👀</a> <a href="#userTesting-kristinazvolanek" title="User Testing">📓</a></td>
</tr>
</tbody>
<tr>
<td align="center"><a href="https://github.com/CesarCaballeroGaudes"><img src="https://avatars1.githubusercontent.com/u/7611340?v=4?s=100" width="100px;" alt=""/><br /><sub><b>Cesar Caballero Gaudes</b></sub></a><br /><a href="https://github.com/physiopy/phys2denoise/commits?author=CesarCaballeroGaudes" title="Code">💻</a> <a href="#ideas-CesarCaballeroGaudes" title="Ideas, Planning, & Feedback">🤔</a></td>
<td align="center"><a href="https://github.com/eril892"><img src="https://avatars.githubusercontent.com/u/91672536?v=4?s=100" width="100px;" alt=""/><br /><sub><b>Raphaël Fournier</b></sub></a><br /><a href="https://github.com/physiopy/phys2denoise/commits?author=eril892" title="Code">💻</a> <a href="#userTesting-eril892" title="User Testing">📓</a> <a href="https://github.com/physiopy/phys2denoise/commits?author=eril892" title="Documentation">📖</a></td>
<td align="center"><a href="https://github.com/TomasLenc"><img src="https://avatars.githubusercontent.com/u/10827440?v=4?s=100" width="100px;" alt=""/><br /><sub><b>Tomas Lenc</b></sub></a><br /><a href="https://github.com/physiopy/phys2denoise/issues?q=author%3ATomasLenc" title="Bug reports">🐛</a> <a href="https://github.com/physiopy/phys2denoise/commits?author=TomasLenc" title="Tests">⚠️</a></td>
<td align="center"><a href="https://github.com/rzlim08"><img src="https://avatars.githubusercontent.com/u/37033997?v=4?s=100" width="100px;" alt=""/><br /><sub><b>rzlim08</b></sub></a><br /><a href="https://github.com/physiopy/phys2denoise/commits?author=rzlim08" title="Code">💻</a> <a href="https://github.com/physiopy/phys2denoise/commits?author=rzlim08" title="Tests">⚠️</a></td>
<td align="center"><a href="http://rossmarkello.com"><img src="https://avatars0.githubusercontent.com/u/14265705?v=4?s=100" width="100px;" alt=""/><br /><sub><b>Ross Markello</b></sub></a><br /><a href="#infra-rmarkello" title="Infrastructure (Hosting, Build-Tools, etc)">🚇</a> <a href="#mentoring-rmarkello" title="Mentoring">🧑‍🏫</a></td>
<td align="center"><a href="https://github.com/smoia"><img src="https://avatars3.githubusercontent.com/u/35300580?v=4?s=100" width="100px;" alt=""/><br /><sub><b>Stefano Moia</b></sub></a><br /><a href="#data-smoia" title="Data">🔣</a> <a href="#infra-smoia" title="Infrastructure (Hosting, Build-Tools, etc)">🚇</a> <a href="#projectManagement-smoia" title="Project Management">📆</a> <a href="https://github.com/physiopy/phys2denoise/commits?author=smoia" title="Code">💻</a> <a href="#ideas-smoia" title="Ideas, Planning, & Feedback">🤔</a> <a href="https://github.com/physiopy/phys2denoise/commits?author=smoia" title="Documentation">📖</a> <a href="#mentoring-smoia" title="Mentoring">🧑‍🏫</a></td>
<td align="center"><a href="https://github.com/AlicePatin"><img src="https://avatars.githubusercontent.com/u/44365985?v=4?s=100" width="100px;" alt=""/><br /><sub><b>Alice Patin</b></sub></a><br /><a href="https://github.com/physiopy/phys2denoise/commits?author=AlicePatin" title="Code">💻</a></td>
<td align="center"><a href="https://github.com/tsalo"><img src="https://avatars3.githubusercontent.com/u/8228902?v=4?s=100" width="100px;" alt=""/><br /><sub><b>Taylor Salo</b></sub></a><br /><a href="https://github.com/physiopy/phys2denoise/commits?author=tsalo" title="Code">💻</a> <a href="#ideas-tsalo" title="Ideas, Planning, & Feedback">🤔</a> <a href="https://github.com/physiopy/phys2denoise/pulls?q=is%3Apr+reviewed-by%3Atsalo" title="Reviewed Pull Requests">👀</a></td>
</tr>
<tr>
<td align="center"><a href="https://github.com/ineschh"><img src="https://avatars.githubusercontent.com/u/72545702?v=4?s=100" width="100px;" alt=""/><br /><sub><b>Inés Chavarría</b></sub></a><br /><a href="#infra-ineschh" title="Infrastructure (Hosting, Build-Tools, etc)">🚇</a></td>
<td align="center"><a href="https://github.com/kristinazvolanek"><img src="https://avatars.githubusercontent.com/u/54590158?v=4?s=100" width="100px;" alt=""/><br /><sub><b>Kristina Zvolanek</b></sub></a><br /><a href="#infra-kristinazvolanek" title="Infrastructure (Hosting, Build-Tools, etc)">🚇</a> <a href="https://github.com/physiopy/phys2denoise/pulls?q=is%3Apr+reviewed-by%3Akristinazvolanek" title="Reviewed Pull Requests">👀</a> <a href="#userTesting-kristinazvolanek" title="User Testing">📓</a></td>
</tr>
</table>

<!-- markdownlint-restore -->
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9 changes: 4 additions & 5 deletions setup.cfg
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name = phys2denoise
url = https://github.com/physiopy/phys2denoise
download_url = https://github.com/physiopy/phys2denoise
author = phys2denoise developers
maintainer = Stefano Moia
author = The Physiopy Community
maintainer = The Physiopy Community
maintainer_email = [email protected]
classifiers =
Development Status :: 1 - Planning
Development Status :: 3 - Alpha
Intended Audience :: Science/Research
License :: OSI Approved :: Apache Software License
Programming Language :: Python :: 3.6
Programming Language :: Python :: 3.7
Programming Language :: Python :: 3
license = Apache-2.0
description = Python library to convert physiological data files into BIDS format
long_description = file:README.md
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