Code

Restructure#38

Code

Merged

smoia merged 43 commits intomasterphysiopy/phys2bids:masterfrom restructurephysiopy/phys2bids:restructureCopy head branch name to clipboardNov 28, 2019

+770-199

Commits

Commits on Nov 20, 2019

• Added heudiconv link

  

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• Added main call

  

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Commits on Nov 21, 2019

• Started writing classes for phys2bids

  

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• Start writing methods

  

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• Turned a string into f string

  

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• Finished object organisation

  

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• Just flake8ed the eof

  

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• Started writing interface for acq files

  

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• changed name of objects

  

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• Started moving acq related code into proper interface file

  

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Commits on Nov 22, 2019

• Removed parent class, added start_time in output

  

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• Adapted print_info to general input object, moved into utils, improved objects, started rewriting of main for objects

  

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• Changed default tr

  

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• removed unnecessary steps and corrected export error

  

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• Changed function has_data_size into has_size, added ch_amount to objects, added method to find offset in time in blueprint_input.

  

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• Created new function to automatically detect extension of input file and check it's supported by phys2bids

  

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• Started adjusting to new objects and functions.

  

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Commits on Nov 25, 2019

• Pseudo code and docstrings

  

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• Completed docstrings

  

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• Added blueprint output and method to populate it from blueprint input

  

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• added methods to delete an indexed element and to return an indexed element

  

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• Added creation of one class property (number of tr found)

  

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• Changed heuristic to add "recording" label

  

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• Adapted channel selection for new objects, added frequency splitting and output object population, started writing real output.

  

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Commits on Nov 26, 2019

• Renamed parser argument and changed default

  

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• Improved docstrings, added method to rename channels in blueprint_input

  

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• renamed "table_header" into "ch_name", added a check on input file existence, moved heuristics around, added renaming of channels using new classes, improved bids naming and output in case of multi…

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• Addressed @eurunuela 's review to PR #38

  

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• Added more docstrings, Keep addressing @eurunuela's review to PR #38, added heudiconv copyright and license

  

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• Addressed @rmarkello 's reviews in PR #38

  

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• Changed ch_name default from Nonetype to empty list

  

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Commits on Nov 27, 2019

• Assignment of empty recording

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  Stefano Moia

  and

  vinferrer

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• Addressing @vinferrer 's review in PR #38, moving method from utils.py physio_obj.py.

  

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• Keep addressing @vinferrer 's PR #38 review

  

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• Bug fix due to external commit

  

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• Bug fixes

  

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• Added check on extension entry in check_input_ext prior to Path().with_suffix()

  

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• Added heuristic for acq test file

  

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Commits on Nov 28, 2019

• Bug fixing post-reviews

  

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• Corrected handling of path objects while using heuristics

  

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• Changed use of heuristics

  

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• Improved heuristic files

  

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• Merge branch 'master' into restructure

  

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