updated mge report writer

phac-nml · Aug 15, 2023 · afd22d8 · afd22d8
1 parent 5f65d9c
commit afd22d8
Showing 1 changed file with 0 additions and 2 deletions.
diff --git a/mob_suite/mob_typer.py b/mob_suite/mob_typer.py
@@ -548,15 +548,13 @@ def main():
             tmp[label] = mge_results[contig_id]
 
         mge_results = tmp
-
         contig_memberships = {'chromosome': {}, 'plasmid': {}}
         for i in range(0, len(mobtyper_results)):
             primary_cluster_id = mobtyper_results[i]['primary_cluster_id']
             if not primary_cluster_id in contig_memberships['plasmid']:
                 contig_memberships['plasmid'][primary_cluster_id] = {}
             contig_id = mobtyper_results[i]['sample_id']
             mobtyper_results[i]['molecule_type'] = 'plasmid'
-
             mobtyper_results[i]['contig_id'] = contig_id
             contig_memberships['plasmid'][primary_cluster_id][contig_id] = mobtyper_results[i]