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Tags: pcamach2/smriprep

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0.8.3

0.8.3 (February 08, 2022)

=========================
Patch release in the 0.8.x series. This allows compatibility with the next minor release of `niworkflows`.

  * DOC: Update scipy intersphinx url (nipreps#276)
  * MAINT: Allow compatibility with new niworkflows minor (nipreps#277)

0.8.2

0.8.2 (December 13, 2021)

=========================
Patch release in the 0.8.x series.

This release includes some minor formatting fixes to the generated workflow boilerplate.
Additionally, the Docker image environment was updated.

  * DOCKER: Update Dockerfile to match fMRIPrep, using FSL 6 (nipreps#274)
  * FIX: Generated boilerplate formatting (nipreps#275)

0.8.1

0.8.1 (October 08, 2021)

Bug-fix release in the 0.8.x series.

All releases since 0.5.3 have incorrectly resampled the (aparc+)aseg
segmentations with trilinear interpolation, rather than nearest-neighbor.
This fix has also been applied in 0.7.2,
to provide a fix in the fMRIPrep LTS series.

  * FIX: Resample aseg with nearest-neighbor interpolation (nipreps#268)

0.7.2

0.7.2 (October 07, 2021)

Bug-fix release in the 0.7.x series.

All releases since 0.5.3 have incorrectly resampled the (aparc+)aseg
segmentations with trilinear interpolation, rather than nearest-neighbor.
This also reverts to using FAST for tissue probability maps, as the
calculations from FreeSurfer's segmentation are less straightforward.

  * FIX: Resample aseg with nearest-neighbor interpolation (nipreps#268)
  * FIX: Revert to FAST for tissue probability maps (nipreps#264)
  * CI: Use separate fallback cache for maint/0.7.x (nipreps#250)

0.8.0

0.8.0 (September 1, 2021)

=========================
A new minor release incorporating small iterations and improvements on
*NiWorkflows*, and including some bug-fixes/enhancements.

* DOC: Ensure copyright notice is found in all Python files (nipreps#248)
* FIX: Revert to FAST for tissue probability segmentations (nipreps#263)
* FIX: Sturdier version check of sMRIPrep-wrapper package (nipreps#245)
* FIX: Do not use deprecated ``--filter pandoc-citeproc`` generating boilerplate (e72eea5)
* FIX: Mask T1w images before transforming to template (nipreps#237)
* FIX: Account for label entity when querying brain mask (nipreps#257)
* MAINT: Run pytest on GitHub Actions (nipreps#262)
* MAINT: Mount TemplateFlow's home directory in CircleCI tests (nipreps#246)
* MAINT: Run ``black`` at the top level of the repo (nipreps#241)
* MAINT: Update to new API of *NiWorkflows* (nipreps#239)
* MAINT: Refactor ``Dockerfile`` and move tests from TravisCI to GHA (nipreps#240)
* MAINT: Use separate fallback cache for maint/0.7.x (nipreps#250)
* MAINT: CircleCI housekeeping (nipreps#258) (nipreps#259)

0.8.0rc3

A new minor release incorporating small iterations and improvements on

NiWorkflows, and including some bug-fixes/enhancements.

DOC: Ensure copyright notice is found in all Python files (nipreps#248)
FIX: Mask T1w images before transforming to template (nipreps#237)
FIX: Account for label entity when querying brain mask (nipreps#257)
MAINT: Use separate fallback cache for maint/0.7.x (nipreps#250)
MAINT: CircleCI housekeeping (nipreps#258) (nipreps#259)

0.8.0rc2

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This tag was signed with the committer’s verified signature.
oesteban Oscar Esteban
0.8.0rc2

A new minor release incorporating small iterations and improvements on
*NiWorkflows*, and including some bug-fixes/enhancements.

* FIX: Sturdier version check of sMRIPrep-wrapper package (nipreps#245)
* FIX: Do not use deprecated ``--filter pandoc-citeproc`` generating boilerplate (e72eea5)
* MAINT: Mount TemplateFlow's home directory in CircleCI tests (nipreps#246)
* MAINT: Run ``black`` at the top level of the repo (nipreps#241)
* MAINT: Update to new API of *NiWorkflows* (nipreps#239)
* MAINT: Refactor ``Dockerfile`` and move tests from TravisCI to GHA (nipreps#240)

0.8.0rc1

Verified

This tag was signed with the committer’s verified signature.
oesteban Oscar Esteban
0.8.0rc1

A new minor release incorporating small iterations and improvements on
*NiWorkflows*, and including some bug-fixes/enhancements.

  * FIX: Do not use deprecated ``--filter pandoc-citeproc`` generating boilerplate (e72eea5)
  * MAINT: Run ``black`` at the top level of the repo (nipreps#241)
  * MAINT: Update to new API of *NiWorkflows* (nipreps#239)
  * MAINT: Refactor ``Dockerfile`` and move tests from TravisCI to GHA (nipreps#240)

0.8.0rc0

Verified

This tag was signed with the committer’s verified signature.
oesteban Oscar Esteban
0.8.0rc0

A shim release pushing the pinning of *NiWorkflows* to allow the development
of *dMRIPrep* and *fMRIPrep* with the next 1.4.x series of *SDCFlows*.

0.7.1

0.7.1 (November 18, 2020)

Bug-fix release in the 0.7.x series.

All releases since 0.4.0 have incorrectly labelled T1w images normalized to a
template space as SkullStripped in the corresponding JSON sidecar files.
This affects 0.4.x through 0.4.2, 0.5.x through 0.5.3, 0.6.x through 0.6.2, and
0.7.0. Prior to 0.4.0, the images were actually skull-stripped, and the metadata
labels were not incorrect.

For backwards compatibility reasons, any future releases of these series will
have SkullStripped set to False. In 0.8 and above, the images will be skull-stripped
and the metadata set back to True.

* CI: CircleCI housekeeping (nipreps#234, nipreps#235)