Here, you'll find links to various tools, articles, datasets, and more, related to the field of Computational Cognitive Neuroscience.
- NETWORK NEUROSCIENCE 2024 - NetSci 2024 in Québec City from June 16th to 21st 2024.
- The Brain Connectivity Toolbox - The Brain Connectivity Toolbox is a MATLAB toolbox for complex brain-network analysis.
- Brain Connectivity Toolbox for Python
- NetworkX - NetworkX is a Python package for the creation, manipulation, and study of the structure, dynamics, and functions of complex networks.
- Connectome Workbench - Connectome Workbench is an open source, freely available visualization and discovery tool used to map neuroimaging data, especially data generated by the Human Connectome Project.
- WhoBPyT - Whole-Brain Modelling in PyTorch
- Blue Brain Portal - Resources for the neuroscientific and the wider scientific community to further research and develop the field of simulation neuroscience.
- THINGS-data - A multimodal collection of large-scale datasets for investigating object representations in brain and behavior.
- Brain Imaging Data Structure - A simple and intuitive way to organize and describe your neuroimaging and behavioral data.
- CRCNS - Collaborative Research in Computational Neuroscience - Data sharing.
- DRYAD - Dryad is an open data publishing platform and a community committed to the open availability and routine re-use of all research data.
- Zenodo - Open Science platform.
- Healthy Brain Network - The Healthy Brain Network dataset (MRI).
- The fMRI Data Center - A free database of fMRI data used in peer reviewed studies (fMRIDC).
- International Brain Laboratory - The International Brain Laboratory releases all data sets within 12 months of collection, or upon acceptance for publication
- Neuro Data Without Borders - Neurodata Without Borders (NWB) is a data standard for neurophysiology, providing neuroscientists with a common standard to share, archive, use, and build analysis tools for neurophysiology data.
- Copmutational psychiatry data - By Dr Eiko Fried
- OpenNEURO - A free and open platform for validating and sharing BIDS-compliant MRI, PET, MEG, EEG, and iEEG data
- BrainMap - BrainMap is a database of published task and structural neuroimaging experiments with coordinate-based results (x,y,z)
- Neurosynth - Neurosynth is a platform for large-scale, automated synthesis of functional magnetic resonance imaging (fMRI) data.
- Poldracklab Software and Data
- Cam-CAN - The Cambridge Centre for Ageing and Neuroscience (Cam-CAN) is a large-scale collaborative research project at the University of Cambridge.Nearly 3000 adults completed a home interview, and a subset of nearly 700 were scanned using structural MRI, functional MRI (both resting and task-based), MEG, and completed multiple cognitive experiments.
- Human Brain Project
- Google Dataset Search
- EBRAINS
- neuro_resources - Useful resources for neuroscientists.
- Methods in Neuroimaging - A list of links and resources for the Methods in Neuroimaging Course (PSY 6930), University of Florida.
- UD_repronim - ReproNim: A Center for Reproducible Neuroimaging Computation.
- Awesome Vision Neuroscience - A curated collection of resources and research on vision neuroscience.
- NeuroGym - NeuroGym is a curated collection of neuroscience tasks with a common interface. The goal is to facilitate training of neural network models on neuroscience tasks.
- awesome-computational-neuro-science
- fast-slow brain network model - Code from paper Learning how network structure shapes decision-making for bio-inspired computing
- An Easy-to-Follow Handbook for EEG Data Analysis based on Python - It's designed as a very easy-to-follow learning guide for anyone looking to get started with EEG data processing using Python.
- Functio-Structural Current (FSC) analysis- Python code to combine functional and structural #brain connectivity (fc&sc) matrices.
- Heterogenous Neural Model (HNM) for large scale modelling of brain activity
- Brain Dynamics Toolbox - The Brain Dynamics Toolbox is open-source matlab software for simulating bespoke dynamical systems in neuroscience and beyond.
- Connectomics Lab - Open source code by Prof. Patric Hagmann's lab (University of Lausanne)
- Short courses and summer schools - various comp neuro / MEEG / LFP short courses and summer schools.
- Gatsby Bridging Programme - The Gatsby Bridging Programme is a mathematics course for Theoretical Neuroscience and/or Machine Learning.
- Mathematical Tools for Neural and Cognitive Science - Graduate course offered by NYU
- Brain-Inspired Artificial Intelligence - Course offered at McGill
- Neuromatch computational neuroscience course
- computational-models-course - Course taught in the Experimental Psychology department at the University of Oxford
- Neuroscience for machine learners - A freely available short course on neuroscience for people with a machine learning background.
- National Neuroscience Curriculum Initiative (NNCI)
- Neurons: Beyond the Textbook - By Allen Institute
- RL Course by David Silver - YouTube videos
- Behavioural modelling - Reinforcment learning and Bayesian learning
- How to Build a Brain from Scratch - Christopher Summerfield's lab, Oxford University
- NeuroML NeuroML is an international, collaborative initiative to develop a language and associated software ecosystem for working with detailed models of neural systems.
- Neurostars - A question and answer forum for neuroscience researchers
- Brain dynamics on the connectome - Talks and tutroial from a network neuroscience summer school at University of Lausanne
- Neuro4ML - Neuroscience for machine learners
- Neuronal Dynamics - From single neurons to networks and models of cognition
- EEG/ERP Analysis with Python and MNE: An Introductory Course - Recommended udemy course
- Mathematics of Neuroscience and AI - Mathematics of Neuroscience and AI 2024 (Rome, 28-31st May 2024)
- Cambridge University Imaging Wiki - Hosts a wealth of information on the design and analysis fMRI studies.
- Neurohackademy- Neurohackademy is a summer school in neuroimaging and data science, held at the University of Washington eScience Institute. Recordings from previous workshops are available.
- NeuroAI_Trainee_Resources - Resources accompanying an upcoming publication on the training of early career researchers in NeuroAI
- Barbaham Bioinformatics - Great source for many stats, programming and plotting courses
- making figures - Tips for making scientific figures
- Scientific Inkscape - Extensions for figure editing and resizing
- ScientificFigures - Explaining scientific findings through figures in publications, presentations, and posters
- Inkspace tutorial - on YouTube
- Neurodesk- A flexible and scalable data analysis environment for reproducible neuroimaging with Neurodesk.
- The Virtual Brain - Brain simulation Github repo
- DeepPrep- An accelerated, scalable, and robust pipeline for neuroimaging preprocessing empowered by deep learning (paper)
- fMRIPrep - fMRIPrep: A Robust Preprocessing Pipeline for fMRI Data
- CorticalParcellation - A novel 15-network parcellation of the cerebral cortex, constructed by estimating networks from functional MRI (fMRI) data
- NEST - NEST is a simulator for spiking neural network models that focuses on the dynamics, size and structure of neural systems rather than on the exact morphology of individual neurons.
- BrainPy - BrainPy is a flexible, efficient, and extensible framework for computational neuroscience and brain-inspired computation
- pynapple - pynapple is a light-weight python library for neurophysiological data analysis.
- fastplotlib - fastplotlib is a next-gen plotting library built using the pygfx rendering engine that can utilize modern GPUs so it is very fast! It is an expressive plotting library that enables rapid prototyping for large scale explorative scientific visualization.
- nemos - nemos is a statistical modeling framework for systems neuroscience, with a current focus on electrophysiology, fully compatible with pynapple. As of today, its core functionality includes the implementation of the Generalized Linear Model (GLM) for spike train analysis.
- MRIcroGL - MRIcroGL allows you to view 2D slices and renderings of your brain imaging data.
- FreeSurfer - An open source neuroimaging toolkit for processing, analyzing, and visualizing human brain MR images
- NLTools - NLTools is a Python package for analyzing neuroimaging data.
- Human Neocortical Neurosolver (HNN) - HNN gives researchers and clinicians the ability to test and develop hypotheses on the circuit mechanism underlying their EEG/MEG data in an easy-to-use environment.
- brainlife - Open-source, free and secure reproducible neuroscience analysis platform
- Neuroinformatics Unit (NIU) at Gatsby Computational Neuroscience Unit- The NIU is dedicated to the development of high quality, accurate, robust, easy to use and maintainable open-source software for neuroscience and machine learning.
- Computational Neuroscience
- The Routledge Handbook of the Computational Mind - An overview of computational approaches.
- Computational Psychiatry Conference
- Society for Nueroscience
- Cosyne - Forum for the exchange of empirical and theoretical approaches to problems in systems neuroscience.
- International Conference on Artificial Neural Networks (ICANN) - Organized by European Neural Network Society.
- Organization for Computational Neurosciences
- Organization for Human Brain Mapping
- Organization for Computational Neuroscience
- The Transmitter - The publication aims to deliver useful information, insights and tools to build bridges across neuroscience and advance research.
- 3D brain atlas - Useful resources for neuroscientists.
- Some good resources - Antonia Hamilton's lab for Social Cognition
- Computational psychiatry resources - APPLIED COMPUTATIONAL PSYCHIATRY LAB, UCL
- International Neuroinformatics Coordinating Facility (INCF) - The mission of INCF network is to promote the uptake of FAIR data management practices in neuroscience through the development of standards and best practices that support open, FAIR, and citable neuroscience.
- NeuroRSE - The NeuroRSE group at Flatiron Institute Center for Computational Neuroscience builds and maintains open source software for computational and systems neuroscience.
- [Advanced Research + Invention Agency (ARIA)[https://www.aria.org.uk/our-team/] - ARIA is an R&D funding agency built to unlock scientific and technological breakthroughs that benefit everyone. Working on high-performance neural interfacing.
- BRAIN Initiative - The Brain Research Through Advancing Innovative Neurotechnologies® Initiative, or The BRAIN Initiative®, is a partnership between Federal and non-Federal partners with a common goal of accelerating the development of innovative neurotechnologies.
- MKDocs - MkDocs is a fast, simple and downright gorgeous static site generator that's geared towards building project documentation.
- EBRAINS - EBRAINS is a platform to share models, tools and data.