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Merge pull request #6 from pathoplexus/virus2
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add virus2
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emmahodcroft authored Dec 9, 2024
2 parents 277e444 + 3350dae commit 12ded5c
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13 changes: 13 additions & 0 deletions example_files/mpox_test_metadata.tsv
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submissionId authorAffiliations authors displayName geoLocAdmin1 geoLocAdmin2 geoLocCity geoLocCountry geoLocLatitude geoLocLongitude geoLocSite hostAge hostNameScientific hostTaxonId insdcAccessionBase insdcAccessionFull ncbiReleaseDate ncbiSourceDb ncbiSubmitterCountry ncbiUpdateDate ncbiVirusName ncbiVirusTaxId sampleCollectionDate specimenCollectorSampleId
TTKC257461 University of Victoria, Biochemistry and Microbiology Reynolds, M. G.; Emerson, G. L.; Pukuta, E.; Karhemere, S.; Muyembe, J. J.; Bikindou, A.; McCollum, A. M.; Moses, C.; Wilkins, K.; Zhao, H.; Damon, I. K.; Karem, K. L.; Li, Y.; Carroll, D. S.; Mombouli, J. V.; Pakuta, E. Republic_of_the_Congo/LOC_00008EY.1/2010-01-01 Eboko Hogwarts Republic of the Congo Homo sapiens 9606 KC257461 KC257461.1 2013-02-25 GenBank 2013-05-13 Monkeypox virus 10244 2010-01-01
TTKJ136820 Robert Koch Institute, IT department/Centre for Biological Security Radonic, A.; Metzger, S.; Dabrowski, P. W.; Couacy-Hymann, E.; Schuenadel, L.; Kurth, A.; Matz-Rensing, K.; Boesch, C.; Leendertz, F. H.; Nitsche, A. Cote_d'Ivoire/LOC_00008FW.1/2012-03-01 Tai National Park Hogwarts Cote d'Ivoire Platyrrhini 9479 KJ136820 KJ136820.1 2014-03-30 GenBank 2014-05-29 Monkeypox virus 10244 2012-03-01
TTKP739435 US Centers for Disease Control and Prevention, PRB McCollum, A. M.; Nakazawa, Y.; Ndongala, G. M.; Pukuta, E.; Karhemere, S.; Lushima, R. S.; Ilunga, B. K.; Kabamba, J.; Wilkins, K.; Gao, J.; Li, Y.; Emerson, G.; Damon, I. K.; Carroll, D. S.; Reynolds, M. G.; Malekani, J.; Tamfum, J. J.; Mccollum, A. M.; Muyembe, J.-J. Democratic_Republic_of_the_Congo/LOC_00008T5.1/2011-11-23 Nord Kivu, Walikale, Boboro Hogwarts Democratic Republic of the Congo Homo sapiens 9606 KP739435 KP739435.1 2015-08-02 GenBank 2024-03-20 Monkeypox virus 10244 2011-11-23 MPX0297
TTKP739436 US Centers for Disease Control and Prevention, PRB McCollum, A. M.; Nakazawa, Y.; Ndongala, G. M.; Pukuta, E.; Karhemere, S.; Lushima, R. S.; Ilunga, B. K.; Kabamba, J.; Wilkins, K.; Gao, J.; Li, Y.; Emerson, G.; Damon, I. K.; Carroll, D. S.; Reynolds, M. G.; Malekani, J.; Tamfum, J. J.; Mccollum, A. M.; Muyembe, J.-J. Democratic_Republic_of_the_Congo/LOC_00008U3.1/2011-11-23 Nord Kivu, Walikale, Boboro Hogwarts Democratic Republic of the Congo Homo sapiens 9606 KP739436 KP739436.1 2015-08-02 GenBank 2024-03-20 Monkeypox virus 10244 2011-11-23 MPX0297
TTKP739438 US Centers for Disease Control and Prevention, PRB McCollum, A. M.; Nakazawa, Y.; Ndongala, G. M.; Pukuta, E.; Karhemere, S.; Lushima, R. S.; Ilunga, B. K.; Kabamba, J.; Wilkins, K.; Gao, J.; Li, Y.; Emerson, G.; Damon, I. K.; Carroll, D. S.; Reynolds, M. G.; Malekani, J.; Tamfum, J. J.; Mccollum, A. M.; Muyembe, J.-J. Democratic_Republic_of_the_Congo/LOC_00008ZT.1/2011-11-23 Nord Kivu, Walikale, Boboro Hogwarts Democratic Republic of the Congo Homo sapiens 9606 KP739438 KP739438.1 2015-08-02 GenBank 2024-03-20 Monkeypox virus 10244 2011-11-23 MPX0297
TTKP739440 US Centers for Disease Control and Prevention, PRB McCollum, A. M.; Nakazawa, Y.; Ndongala, G. M.; Pukuta, E.; Karhemere, S.; Lushima, R. S.; Ilunga, B. K.; Kabamba, J.; Wilkins, K.; Gao, J.; Li, Y.; Emerson, G.; Damon, I. K.; Carroll, D. S.; Reynolds, M. G.; Malekani, J.; Tamfum, J. J.; Mccollum, A. M.; Muyembe, J.-J. Democratic_Republic_of_the_Congo/LOC_000091P.1/2012-09-12 Nord Kivu, Musienene, Butembo Hogwarts Democratic Republic of the Congo Homo sapiens 9606 KP739440 KP739440.1 2015-08-02 GenBank 2024-03-20 Monkeypox virus 10244 2012-09-12 MPX0338
TTKP739441 US Centers for Disease Control and Prevention, PRB McCollum, A. M.; Nakazawa, Y.; Ndongala, G. M.; Pukuta, E.; Karhemere, S.; Lushima, R. S.; Ilunga, B. K.; Kabamba, J.; Wilkins, K.; Gao, J.; Li, Y.; Emerson, G.; Damon, I. K.; Carroll, D. S.; Reynolds, M. G.; Malekani, J.; Tamfum, J. J.; Mccollum, A. M.; Muyembe, J.-J. Democratic_Republic_of_the_Congo/LOC_000092M.1/2012-09-12 Nord Kivu, Musienene, Butembo Hogwarts Democratic Republic of the Congo Homo sapiens 9606 KP739441 KP739441.1 2015-08-02 GenBank 2024-03-20 Monkeypox virus 10244 2012-09-12 MPX0338
TTKP739443 US Centers for Disease Control and Prevention, PRB McCollum, A. M.; Nakazawa, Y.; Ndongala, G. M.; Pukuta, E.; Karhemere, S.; Lushima, R. S.; Ilunga, B. K.; Kabamba, J.; Wilkins, K.; Gao, J.; Li, Y.; Emerson, G.; Damon, I. K.; Carroll, D. S.; Reynolds, M. G.; Malekani, J.; Tamfum, J. J.; Mccollum, A. M.; Muyembe, J.-J. Democratic_Republic_of_the_Congo/LOC_000095F.1/2012-09-12 Nord Kivu, Musienene, Butembo Hogwarts Democratic Republic of the Congo Homo sapiens 9606 KP739443 KP739443.1 2015-08-02 GenBank 2024-03-20 Monkeypox virus 10244 2012-09-12 MPX0338
TTKP739445 US Centers for Disease Control and Prevention, PRB McCollum, A. M.; Nakazawa, Y.; Ndongala, G. M.; Pukuta, E.; Karhemere, S.; Lushima, R. S.; Ilunga, B. K.; Kabamba, J.; Wilkins, K.; Gao, J.; Li, Y.; Emerson, G.; Damon, I. K.; Carroll, D. S.; Reynolds, M. G.; Malekani, J.; Tamfum, J. J.; Mccollum, A. M.; Muyembe, J.-J. Democratic_Republic_of_the_Congo/LOC_000097B.1/2012-12-17 Sud Kivu, Shabunda, Mabaka Hogwarts Democratic Republic of the Congo Homo sapiens 9606 KP739445 KP739445.1 2015-08-02 GenBank 2024-03-20 Monkeypox virus 10244 2012-12-17 MPX0420
TTKP739446 US Centers for Disease Control and Prevention, PRB McCollum, A. M.; Nakazawa, Y.; Ndongala, G. M.; Pukuta, E.; Karhemere, S.; Lushima, R. S.; Ilunga, B. K.; Kabamba, J.; Wilkins, K.; Gao, J.; Li, Y.; Emerson, G.; Damon, I. K.; Carroll, D. S.; Reynolds, M. G.; Malekani, J.; Tamfum, J. J.; Mccollum, A. M.; Muyembe, J.-J. Democratic_Republic_of_the_Congo/LOC_0000989.1/2012-12-17 Sud Kivu, Shabunda, Mabaka Hogwarts Democratic Republic of the Congo Homo sapiens 9606 KP739446 KP739446.1 2015-08-02 GenBank 2024-03-20 Monkeypox virus 10244 2012-12-17 MPX0420
TTKP739448 US Centers for Disease Control and Prevention, PRB McCollum, A. M.; Nakazawa, Y.; Ndongala, G. M.; Pukuta, E.; Karhemere, S.; Lushima, R. S.; Ilunga, B. K.; Kabamba, J.; Wilkins, K.; Gao, J.; Li, Y.; Emerson, G.; Damon, I. K.; Carroll, D. S.; Reynolds, M. G.; Malekani, J.; Tamfum, J. J.; Mccollum, A. M.; Muyembe, J.-J. Democratic_Republic_of_the_Congo/LOC_00009A5.1/2012-12-17 Sud Kivu, Shabunda, Mabaka Hogwarts Democratic Republic of the Congo Homo sapiens 9606 KP739448 KP739448.1 2015-08-02 GenBank 2024-03-20 Monkeypox virus 10244 2012-12-17 MPX0420
TTMN702452 Centre International de Recherches Medicales de Franceville, Virology Selekon, B.; Labouba, I. L.; Gonofio, E. C.; Sem Ouilibona, R.; Simo Tchetgna, H.; Besombes, C.; Feher, M.; Fontanet, A.; Kazanji, M.; Manugerra, J.-C.; Gessain, A.; Nakoune, E.; Berthet, N.; Nkili Meyong, A. Central_African_Republic/LOC_0000BGR.1/2010-08-10 Hogwarts Central African Republic Homo sapiens 9606 MN702452 MN702452.1 2020-08-29 GenBank 2020-08-29 Monkeypox virus 10244 2010-08-10
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