Update update-page.yml #2
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Generate Pathoplexus Example Data List | |
| on: | |
| push: | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.x' | |
| - name: Create Python script | |
| run: | | |
| cat << EOF > generate_list.py | |
| import os | |
| import html | |
| from datetime import datetime | |
| import shutil | |
| def get_file_icon(file): | |
| ext = os.path.splitext(file)[1].lower() | |
| if ext in ['.fasta', '.fa', '.fna']: | |
| return '<i class="fas fa-dna" title="FASTA file"></i>' | |
| elif ext in ['.tsv', '.tab']: | |
| return '<i class="fas fa-table" title="TSV file"></i>' | |
| elif ext in ['.py', '.js', '.css', '.html', '.json']: | |
| return f'<i class="fas fa-file-code" title="{ext[1:]} file"></i>' | |
| elif ext in ['.jpg', '.jpeg', '.png', '.gif', '.svg']: | |
| return f'<i class="fas fa-file-image" title="{ext[1:]} file"></i>' | |
| elif ext in ['.pdf', '.doc', '.docx', '.txt']: | |
| return f'<i class="fas fa-file-alt" title="{ext[1:]} file"></i>' | |
| else: | |
| return '<i class="fas fa-file"></i>' | |
| def generate_html(): | |
| file_list = [] | |
| example_data_dir = './example_data' | |
| if not os.path.exists(example_data_dir): | |
| print(f"Error: {example_data_dir} directory not found.") | |
| return | |
| for root, dirs, files in os.walk(example_data_dir): | |
| for file in files: | |
| if file != 'index.html' and not file.startswith('.'): | |
| path = os.path.join(root, file) | |
| rel_path = os.path.relpath(path, example_data_dir) | |
| size = os.path.getsize(path) | |
| mtime = os.path.getmtime(path) | |
| file_list.append((rel_path, size, mtime)) | |
| # Copy file to current directory | |
| shutil.copy2(path, os.path.join('.', rel_path)) | |
| html_content = ''' | |
| <!DOCTYPE html> | |
| <html lang="en"> | |
| <head> | |
| <meta charset="UTF-8"> | |
| <meta name="viewport" content="width=device-width, initial-scale=1.0"> | |
| <title>Pathoplexus Example Data</title> | |
| <link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.15.1/css/all.min.css" rel="stylesheet"> | |
| <style> | |
| body { font-family: 'Segoe UI', Tahoma, Geneva, Verdana, sans-serif; line-height: 1.6; padding: 20px; background-color: #f4f4f4; color: #333; } | |
| .container { max-width: 800px; margin: 0 auto; background-color: #fff; padding: 20px; border-radius: 5px; box-shadow: 0 2px 5px rgba(0,0,0,0.1); } | |
| h1 { color: #2c3e50; text-align: center; margin-bottom: 20px; } | |
| table { width: 100%; border-collapse: collapse; } | |
| th, td { padding: 12px; text-align: left; border-bottom: 1px solid #e0e0e0; } | |
| th { background-color: #f2f2f2; font-weight: bold; color: #2c3e50; } | |
| tr:hover { background-color: #f5f5f5; } | |
| a { color: #3498db; text-decoration: none; } | |
| a:hover { color: #2980b9; } | |
| .file-icon { margin-right: 10px; color: #7f8c8d; } | |
| .file-size, .file-date { color: #7f8c8d; font-size: 0.9em; } | |
| </style> | |
| </head> | |
| <body> | |
| <div class="container"> | |
| <h1>Pathoplexus Example Data</h1> | |
| <table> | |
| <thead> | |
| <tr> | |
| <th>File Name</th> | |
| <th>Size</th> | |
| <th>Last Modified</th> | |
| </tr> | |
| </thead> | |
| <tbody> | |
| ''' | |
| for file, size, mtime in sorted(file_list): | |
| icon = get_file_icon(file) | |
| size_str = f'{size/1024:.1f} KB' if size >= 1024 else f'{size} bytes' | |
| date_str = datetime.fromtimestamp(mtime).strftime('%Y-%m-%d %H:%M:%S') | |
| html_content += f''' | |
| <tr> | |
| <td><a href="{html.escape(file)}">{icon} {html.escape(file)}</a></td> | |
| <td class="file-size">{size_str}</td> | |
| <td class="file-date">{date_str}</td> | |
| </tr> | |
| ''' | |
| html_content += ''' | |
| </tbody> | |
| </table> | |
| </div> | |
| </body> | |
| </html> | |
| ''' | |
| with open('index.html', 'w') as f: | |
| f.write(html_content) | |
| print(f"index.html has been created in {os.getcwd()}") | |
| generate_html() | |
| EOF | |
| - name: Generate Pathoplexus example data list | |
| run: python generate_list.py | |
| - name: Debug - List directory contents | |
| run: | | |
| echo "Current directory:" | |
| pwd | |
| echo "Files in current directory:" | |
| ls -la | |
| - name: Commit and push to gh-pages | |
| run: | | |
| git config --global user.name 'GitHub Action' | |
| git config --global user.email '[email protected]' | |
| git checkout -b gh-pages | |
| git add index.html || echo "index.html not found" | |
| git add example_data/* || echo "No files in example_data" | |
| git status | |
| git commit -m "Update Pathoplexus example data list" || echo "No changes to commit" | |
| git push -f origin gh-pages |