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@ucsdmanorlab UCSD-Manor Lab

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    11 repositories

    • abranalysis

      Public
      Abhi ABR analysis
      Jupyter Notebook
      •4•0•0•0•Updated Mar 3, 2025Mar 3, 2025

    • bootstrapper

      Public
      Models and scripts to bootstrap and refine 3D instance segmentation models from sparse 2D labels
      Python
      •
      MIT License
      •1•2•1•0•Updated Feb 19, 2025Feb 19, 2025

    • PSSR2

      Public
      Point-Scanning Super-Resolution 2
      Python
      •
      MIT License
      •0•7•0•0•Updated Jan 3, 2025Jan 3, 2025

    • Napari-VASCilia

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•2•0•0•Updated Dec 9, 2024Dec 9, 2024

    • cochlea-synapseg

      Public
      napari plugin for cochlea synapse segmentation
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Nov 7, 2024Nov 7, 2024

    • cochlea_synapses

      Public
      Python
      •0•0•0•0•Updated Oct 18, 2024Oct 18, 2024

    • sparsity_experiments

      Public
      scripts to train LSDs and affinities on sparse ground truth
      Jupyter Notebook
      •0•0•0•0•Updated Oct 4, 2024Oct 4, 2024

    • PSSR-old

      Public
      Deep Learning-Based Point-Scanning Super-Resolution (PSSR)
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •29•0•0•0•Updated Jun 5, 2024Jun 5, 2024

    • ims_reader

      Public
      reads image data, spot locations, and surface locations from imaris files
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Apr 9, 2024Apr 9, 2024

    • manor_bibtex

      Public
      TeX
      •0•0•0•0•Updated Dec 19, 2023Dec 19, 2023

    • napari-bootstrapper

      Public
      A plugin to quickly generate ground truth with sparse labels
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•1•0•Updated Sep 18, 2023Sep 18, 2023