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    347 repositories

    • omop-cdm

      Public
      SQLAlchemy definition of the OHDSI OMOP CDM
      Python
      •
      Apache License 2.0
      •0•0•0•2•Updated Feb 10, 2025Feb 10, 2025

    • fairspace

      Public
      Fairspace provides a secure environment for managing research data.
      metadatardfwebdavfairresearch-datafairspace
      JavaScript
      •
      Apache License 2.0
      •5•12•0•1•Updated Feb 10, 2025Feb 10, 2025

    • OnToma

      Public
      Map your disease and phenotype terms to the Open Targets platform ontology
      Python
      •
      Other
      •6•0•0•8•Updated Feb 10, 2025Feb 10, 2025

    • OHDSI-WhiteRabbit

      Public
      WhiteRabbit is a small application that can be used to analyse the structure and contents of a database as preparation for designing an ETL. It comes with RabbitInAHat, an application for interactive design of an ETL to the OMOP Common Data Model with the help of the the scan report generated by White Rabbit.
      Java
      •
      Apache License 2.0
      •93•0•0•3•Updated Jan 31, 2025Jan 31, 2025

    • cbioportal-frontend

      Public
      React Frontend of cBioPortal 🎉
      TypeScript
      •
      GNU Affero General Public License v3.0
      •318•0•0•15•Updated Jan 28, 2025Jan 28, 2025

    • ManagementPortal

      Public
      Custom client branches for Management Portal
      Kotlin
      •
      Apache License 2.0
      •17•0•0•3•Updated Dec 16, 2024Dec 16, 2024

    • cbioportal-core

      Public
      Externalized cBioPortal Core
      Java
      •19•0•0•1•Updated Dec 11, 2024Dec 11, 2024

    • cbioportal

      Public
      cBioPortal topic branches at The Hyve
      cbioportal
      Java
      •
      GNU Affero General Public License v3.0
      •600•3•0•0•Updated Dec 11, 2024Dec 11, 2024

    • ot-ui-apps

      Public
      JavaScript
      •
      Apache License 2.0
      •11•1•2•20•Updated Dec 5, 2024Dec 5, 2024

    • fairspace-keycloak

      Public
      Helm chart for installing Keycloak for Fairspace
      keycloakhelm-chartfairspace
      Mustache
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 28, 2024Nov 28, 2024

    • gentropy

      Public
      Open Targets python framework for post-GWAS analysis
      Jupyter Notebook
      •
      Apache License 2.0
      •9•0•1•1•Updated Nov 27, 2024Nov 27, 2024

    • genetics-sumstat-data

      Public
      Workflows for processing summary statistics files for Open Targets Genetics
      HTML
      •
      Apache License 2.0
      •2•0•0•0•Updated Nov 26, 2024Nov 26, 2024

    • fairspace-docs

      Public
      Public Fairspace documentation
      fairspace
      HTML
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 13, 2024Nov 13, 2024

    • ot-ai-api

      Public
      JavaScript
      •
      Apache License 2.0
      •1•0•0•8•Updated Oct 31, 2024Oct 31, 2024

    • radar-sample-scripts

      Public
      Sample scripts and app to access RADAR-base entities and Minio data from the REST API and Minio SDK
      Shell
      •
      Apache License 2.0
      •0•0•0•1•Updated Oct 11, 2024Oct 11, 2024

    • BioCypher-OT

      Public
      Python
      •4•1•0•0•Updated Oct 1, 2024Oct 1, 2024

    • react-gtex-viz

      Public archive
      React components for visualisations from the GTEx web portal
      reactgtex
      JavaScript
      •
      Other
      •1•2•0•2•Updated Sep 30, 2024Sep 30, 2024

    • platform-api

      Public
      GraphQL and Rest API rewrite of the current Open Targets platform API
      Scala
      •
      Apache License 2.0
      •5•0•0•0•Updated Sep 26, 2024Sep 26, 2024

    • Capr-PHEMS

      Public
      Cohort definition Application Programming in R fork for PHEMS project
      R
      •
      Apache License 2.0
      •12•0•0•1•Updated Sep 20, 2024Sep 20, 2024

    • Capr-PLUS

      Public
      Cohort definition Application Programming in R fork for PHEMS project
      R
      •
      Apache License 2.0
      •12•0•0•1•Updated Sep 3, 2024Sep 3, 2024

    • genome-nexus-vep

      Public archive
      Java
      •15•0•0•1•Updated Aug 26, 2024Aug 26, 2024

    • biochatter-server

      Public
      Flask server for BioChatter integration into web apps
      Python
      •
      MIT License
      •8•0•0•0•Updated Aug 22, 2024Aug 22, 2024

    • platform-tractability_pipeline_v2

      Public
      Pipeline for assessing the tractability of potential targets (starting from Gene IDs)
      Python
      •
      MIT License
      •8•0•0•1•Updated Jul 22, 2024Jul 22, 2024

    • biocypher

      Public
      A unifying framework for biomedical research knowledge graphs
      Python
      •
      MIT License
      •31•1•0•8•Updated Jul 15, 2024Jul 15, 2024

    • biocypher-cbioportal

      Public
      a cBioPortal adapter for the BioCypher framework
      Python
      •
      MIT License
      •0•1•0•5•Updated Jul 6, 2024Jul 6, 2024

    • fairspace-jupyter

      Public
      Code for connecting JupyterHub to Fairspace
      jupyterhelm-chartfairspace
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Jun 17, 2024Jun 17, 2024

    • radar-data-dashboard-backend

      Public
      RADAR-base Data Dashboard backend
      Kotlin
      •
      Apache License 2.0
      •0•0•0•0•Updated May 29, 2024May 29, 2024

    • single-cell-explorer

      Public
      Hosted version of cellxgene
      TypeScript
      •
      MIT License
      •3•0•0•0•Updated May 2, 2024May 2, 2024

    • amazing-planning-generator

      Public
      Sharks gotta swim. Bats gotta fly. And I'll need a weekly planning till I die.
      Python
      •0•1•0•0•Updated Apr 22, 2024Apr 22, 2024

    • genetics-finemapping

      Public
      Fine-mapping pipeline for Open Targets Genetics
      Python
      •
      Apache License 2.0
      •8•0•0•0•Updated Mar 6, 2024Mar 6, 2024