Repositories list

• coryphoideae_species_tree

  Public
  Palm subfamily Coryhpoideae higher-level systematics

  Python

  •1•0•0•0•Updated Dec 2, 2024Dec 2, 2024

• Livets_Diversitet_fylogeni

  Public
  Fylogenetisk øvelse 1. semester "Livets Diversitet" uge 37

  1•0•0•0•Updated Jul 14, 2024Jul 14, 2024

• alpine_saxifraga

  Public
  R

  •1•0•0•0•Updated Jan 18, 2024Jan 18, 2024

• tree_incongruence_divergence_times

  Public
  R

  •1•1•0•0•Updated May 2, 2023May 2, 2023

• code_snippets

  Public
  Collection of code snippets with high re-usage potential

  R

  •

  GNU General Public License v2.0

  •0•0•0•0•Updated Feb 10, 2023Feb 10, 2023

• Global-plant-diversity

  Public
  Code and data description to reproduce Tietje et al. (2022) Global variation in diversification rate and species richness are unlinked in plants (https://doi.org/10.1073/pnas.2120662119)

  geographyphylogenetic-treespecies-richness+ 3spermatophytaspeciation-rateswcvp

  R

  •0•2•0•0•Updated May 12, 2022May 12, 2022

• Distribution_of_phylogenetic_data

  Public
  Mapping and explaining the distribution of phylogenetic knowledge

  msc

  R

  •0•1•0•0•Updated Mar 24, 2022Mar 24, 2022

• Dypsidinae_species_tree

  Public
  Reconstructing the species tree of palm subtribe Dypsidinae using the target capture loci of Heyduk et al. 2016 (doi: 10.1111/bij.12551)

  phylogenomicsarecaceaeppwg+ 1madclades

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 30, 2021Dec 30, 2021

• taxonomy_matcher

  Public
  Workflow to match WCVP names with different taxonomic names as provided by BIEN, NCBI, GBIF

  ncbibienwcsp+ 3tropitolspermatophytataxonomy

  R

  •

  GNU General Public License v3.0

  •0•2•0•0•Updated Nov 9, 2021Nov 9, 2021

• colombian_palm_traits

  Public
  Phylogenetic analysis for Trujillo et al. (2021) "Palm functional trait responses to local environmental factors in the Colombian Amazon" (https://doi.org/10.1017/S0266467421000493)

  R

  •0•0•0•0•Updated Sep 27, 2021Sep 27, 2021

• Maesa_sptree

  Public
  all scripts using in building a species tree of Maesa

  Shell

  •0•0•0•0•Updated Jun 14, 2021Jun 14, 2021

• PyPHLAWD_WC

  Public
  Python version of PHLAWD

  Python

  •

  GNU General Public License v2.0

  •7•0•0•0•Updated Mar 8, 2021Mar 8, 2021

• Seed_Plant_BackBone

  Public
  This repo includes data, scripts and workflow descriptions for the seed plant backbone phylogeny and dating

  R

  •

  MIT License

  •0•0•0•0•Updated Mar 5, 2021Mar 5, 2021

• Saxifraga-future-distributions

  Public
  All R scripts used for my Saxifraga project

  R

  •0•0•0•0•Updated Nov 16, 2020Nov 16, 2020

• Shiny-Palm-Atlas

  Public
  Seeking to replicate palmweb with botanical countries, and then expand upon it with cleaned species occurence points, including options to refine searches.

  bioproject

  R

  •0•0•0•0•Updated Jun 17, 2020Jun 17, 2020

• pos_phylo_biogeo

  Public
  Species-level phylogeny and biogeography of the POS-clade (Arecaceae) with special focus on the disjunct distribution of Orania, using the target capture loci of Heyduk et al. 2016 (doi: 10.1111/bij.12551) • Second part: testing the 'time-for-speciation' hypothesis in Madagascan palms

  treespeciesphylogenomics+ 7mscmadagascarbiogeographypalmsarecaceaeoraniapos-clade

  R

  •1•0•0•0•Updated Jun 16, 2020Jun 16, 2020

• pebgroup.github.io

  Public
  Plant Evolution and Biodiversity Group - HTML referral to https://peb-group.net

  HTML

  •0•1•0•0•Updated Mar 26, 2020Mar 26, 2020