Repositories list

• Microtubule

  Public
  Microtubule related python scripts (FREALIGN based)

  Python

  •1•3•0•0•Updated Nov 8, 2015Nov 8, 2015

• EMAN2

  Public
  collection of EMAN2/SPARX scripts

  Python

  •0•2•1•0•Updated Mar 11, 2013Mar 11, 2013

• Focused_classification

  Public
  Scripts for focused classification of flexible subdomains

  0•1•0•0•Updated Oct 22, 2012Oct 22, 2012

• Multislice

  Public
  Multislice image simulations of PDB models

  C

  •0•2•0•0•Updated Oct 20, 2012Oct 20, 2012

• AutoAlign

  Public
  2D reference-free analysis using a topology representing network for single particle cryo-electron microscopy data

  C++

  •0•2•0•0•Updated Oct 5, 2012Oct 5, 2012

• FreeHand

  Public
  Scripts for implementing the Free Hand test from Rosenthal & Henderson 2003

  Python

  •0•2•0•0•Updated Sep 25, 2012Sep 25, 2012

• FREALIGN

  Public
  Scripts to run FREALIGN refinements and 3D variance calculations

  Shell

  •0•1•0•0•Updated Sep 24, 2012Sep 24, 2012

• OTR

  Public
  Orthogonal tilt reconstruction (OTR) scripts

  Python

  •0•3•0•0•Updated Aug 14, 2012Aug 14, 2012

• SPIDER

  Public
  SPIDER scripts for refinement, 3D variance, and general use

  Python

  •0•2•0•0•Updated Jul 12, 2012Jul 12, 2012

• EMAN2recon

  Public
  3D reconstruction scripts using EMAN2/SPARX libraries

  Python

  •1•2•0•0•Updated Jul 3, 2012Jul 3, 2012

• Imagic-3D-Classification

  Public
  Scripts for running 3D classification within IMAGIC

  0•2•0•0•Updated Jun 9, 2012Jun 9, 2012

• Multimodel

  Public
  Multimodel refinement using cross correlation of common lines (Shatsky, Hall, et al. 2010)

  0•2•0•0•Updated Jun 8, 2012Jun 8, 2012

• XMIPP

  Public
  Scripts that interace with the XMIPP software package for processing electron microscopy images

  Shell

  •0•2•0•0•Updated Jun 8, 2012Jun 8, 2012