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@nmfs-ost Office of Science & Technology at NOAA Fisheries

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    36 repositories

    • ss3-user-examples

      Public
      Stock synthesis example models for users
      fisheriesstock-synthesis
      Scheme
      •
      Creative Commons Zero v1.0 Universal
      •5•1•8•0•Updated Feb 18, 2025Feb 18, 2025

    • ss3-doc

      Public
      Source code for the Stock Synthesis manual and other documentation
      latexstock-synthesis
      TeX
      •
      Creative Commons Zero v1.0 Universal
      •2•4•15•0•Updated Feb 18, 2025Feb 18, 2025

    • PAM_National_Network

      Public
      National coordination page for the seven NOAA Fisheries Passive Acoustic Monitoring Programs
      JavaScript
      •
      Creative Commons Zero v1.0 Universal
      •0•2•8•0•Updated Feb 18, 2025Feb 18, 2025

    • asar

      Public
      Partially automate a U.S. stock assessment report.
      latexquartostock-assessment-reports
      R
      •
      MIT License
      •5•19•11•4•Updated Feb 18, 2025Feb 18, 2025

    • FIT-status

      Public
      nmfs-fish-tools status dashboard based on https://github.com/espinielli/status
      dashboardproject-managementnoaa-fit
      R
      •0•2•1•0•Updated Feb 17, 2025Feb 17, 2025

    • Genomics_Resources

      Public
      Nextflow
      •
      Other
      •0•2•0•0•Updated Feb 15, 2025Feb 15, 2025

    • AA-SI_aalibrary

      Public
      A python library used for fetching acoustics data.
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Feb 14, 2025Feb 14, 2025

    • satf

      Public
      R package that contains general tables and figures such as standard objects in an assessment report, and other important visualizations to interpret results of stock assessment models.
      R
      •
      Other
      •3•3•12•2•Updated Feb 14, 2025Feb 14, 2025

    • PAM-GliderRodeo

      Public
      Repository associated with the NMFS PAM-Glider "Glider Rodeo", a collaborative in-water investigation into contemporary PAM-glider systems
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •0•1•15•0•Updated Feb 14, 2025Feb 14, 2025

    • PAM-Trends

      Public
      Summary of NOAA Fisheries PAM Trends Research
      JavaScript
      •
      Creative Commons Zero v1.0 Universal
      •0•0•2•0•Updated Feb 13, 2025Feb 13, 2025

    • journals

      Public
      Bibliography files for journals of interest to fisheries
      TeX
      •
      GNU General Public License v3.0
      •0•13•5•1•Updated Feb 10, 2025Feb 10, 2025

    • AA-SI_PublicPage

      Public
      Public-facing information about the Active Acoustics Strategic Initiative
      Lua
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Feb 7, 2025Feb 7, 2025

    • .github

      Public
      templatesggt
      0•0•0•1•Updated Feb 5, 2025Feb 5, 2025

    • ss3-test-models

      Public
      Stock Synthesis models used for testing
      fisheriesstock-synthesis
      Scheme
      •
      Creative Commons Zero v1.0 Universal
      •1•3•12•0•Updated Feb 4, 2025Feb 4, 2025

    • ss3-source-code

      Public
      The source code for Stock Synthesis (SS3).
      fisheriesstockassessmentstock-synthesis
      C++
      •
      Creative Commons Zero v1.0 Universal
      •17•38•108•1•Updated Feb 4, 2025Feb 4, 2025

    • PAM-Glider

      Public
      Summary of NOAA Fisheries PAM equipped Glider Research.
      Lua
      •
      Creative Commons Zero v1.0 Universal
      •0•1•1•0•Updated Feb 3, 2025Feb 3, 2025

    • ss3-website

      Public
      SS3 Website
      stock-synthesis
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •0•0•6•0•Updated Feb 3, 2025Feb 3, 2025

    • PAM-glider-CalCurCEAS

      Public
      glider piloting and analysis overlapping with CalCurCEAS 2024
      MATLAB
      •
      MIT License
      •0•2•0•0•Updated Jan 27, 2025Jan 27, 2025

    • asar-demo

      Public
      A tutorial on using asar for creating a stock assessment report at NOAA
      TeX
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Dec 31, 2024Dec 31, 2024

    • AA-SI_onboarding

      Public
      Active Acoustic Strategic Initiative onboarding site
      MIT License
      •0•0•0•0•Updated Dec 18, 2024Dec 18, 2024

    • AA-SI_main

      Public
      Apache License 2.0
      •1•2•0•0•Updated Dec 18, 2024Dec 18, 2024

    • AA-SI_echoSMs

      Public
      Acoustic scattering models for fish and plankton
      MIT License
      •0•0•0•0•Updated Dec 18, 2024Dec 18, 2024

    • fork-practice

      Public
      demo repo
      11•0•0•0•Updated Dec 9, 2024Dec 9, 2024

    • nmfs-ost.r-universe.dev

      Public
      CRAN-like repository for the nmfs-ost packages. Binaries are available for Windows and MacOS
      Creative Commons Zero v1.0 Universal
      •3•0•0•0•Updated Nov 22, 2024Nov 22, 2024

    • PAM_template_lab_manual

      Public template
      Template for development of regional lab manuals as part of the PAM SI.
      JavaScript
      •
      Creative Commons Zero v1.0 Universal
      •0•2•3•0•Updated Oct 31, 2024Oct 31, 2024

    • public-test

      Public
      0•0•0•0•Updated Oct 18, 2024Oct 18, 2024

    • k-doering-utilities

      Public
      Utility scripts and functions
      R
      •
      MIT License
      •0•1•0•0•Updated Jul 15, 2024Jul 15, 2024

    • ss3-trainings

      Public template
      stock-synthesis
      Scheme
      •
      Creative Commons Zero v1.0 Universal
      •0•2•0•0•Updated Apr 22, 2024Apr 22, 2024

    • ss3-ssi

      Public
      The source code for Stock Synthesis Interface (SSI), the Stock Synthesis GUI
      qtstock-synthesis
      C++
      •
      Creative Commons Zero v1.0 Universal
      •0•2•0•0•Updated Apr 22, 2024Apr 22, 2024

    • minimizR

      Public
      Function minimizer for R
      C++
      •1•0•0•0•Updated Mar 24, 2024Mar 24, 2024