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    10 repositories

    • nSPECTRa

      Public
      Nextflow workflow to compute the mutation spectra
      Nextflow
      •
      MIT License
      •0•2•0•1•Updated Jan 12, 2025Jan 12, 2025

    • nf-LO

      Public
      A Nextflow workflow to generate lift over files for any pair of genomes
      genomeliftovernextflow-workflownextflow-dsl2bioinformatics
      Nextflow
      •
      MIT License
      •10•56•0•2•Updated Dec 2, 2024Dec 2, 2024

    • nf-VarAnno

      Public
      A cross-species variant annotation pipeline based on Nextflow
      Nextflow
      •1•0•0•0•Updated Sep 8, 2024Sep 8, 2024

    • CattleGraphGenomePaper

      Public
      Set of script for the paper on the cattle graph genome
      Shell
      •1•13•0•0•Updated Jan 10, 2023Jan 10, 2023

    • GCRF_tutorial

      Public
      Material for the bioinformatics tutorial held in Tanzania in May 2022
      HTML
      •0•0•0•0•Updated May 24, 2022May 24, 2022

    • CattleOManalyses

      Public
      Script and some results from the Optical mapping SV analyses
      Shell
      •
      MIT License
      •0•1•0•0•Updated May 2, 2022May 2, 2022

    • wBuffaloVsCow

      Public
      Code accompanying manuscript "Whole genome analysis of water buffalo and global cattle breeds highlights convergent signatures of domestication"
      R
      •
      GNU General Public License v3.0
      •1•3•0•0•Updated Aug 21, 2020Aug 21, 2020

    • hapbin

      Public
      Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)
      C++
      •
      GNU General Public License v3.0
      •18•43•15•2•Updated Oct 24, 2019Oct 24, 2019

    • hapbinX

      Public
      Pairwise version of hapbin (https://github.com/evotools/hapbin) for studying the strength of selection on multi-allelic haplotypes
      C++
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Jun 23, 2017Jun 23, 2017

    • mm-iHS

      Public
      Scripts for calculating mm-iHS
      Perl
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 16, 2016May 16, 2016