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    16 repositories

    • omap

      Public
      Ontology Mapping tool for OMOP, assisted by Language AI, using Streamlit
      Python
      •1•0•1•1•Updated Feb 10, 2025Feb 10, 2025

    • bio-ext

      Public
      Biomarker and deep phenotype extraction platform, as an extension to CogStack, or other unstructured data stores in hospital EHR systems
      Python
      •1•1•5•1•Updated Feb 10, 2025Feb 10, 2025

    • sde_aic_external_docs

      Public
      Technical documentation for London SDE / AIC programme (Github pages)
      CSS
      •0•0•0•0•Updated Jan 1, 2025Jan 1, 2025

    • .github

      Public
      0•0•0•0•Updated Jan 1, 2025Jan 1, 2025

    • temp_omop_cxr

      Public
      temporary repo to bootstrap synthetic CXR omop files (to merge into xraycat later)
      Python
      •0•0•0•0•Updated Dec 16, 2024Dec 16, 2024

    • omop_synthetic

      Public
      Simplistic synthetic dataset generation for OMOP CDM 5.4 testing
      Python
      •0•0•1•0•Updated Dec 6, 2024Dec 6, 2024

    • mlflow-boto-docker

      Public
      Simple dockerfile to add boto3 to official MLflow image
      Dockerfile
      •0•0•0•0•Updated Nov 23, 2024Nov 23, 2024

    • omop_vocab_duck

      Public
      (1) Upload OMOP CDM 5.4 Athena tables to Motherduck; (2) Add custom mappings to vanilla tables locally, then export relevant items to parquet;
      0•0•0•0•Updated Nov 8, 2024Nov 8, 2024

    • sde-aic

      Public
      Summary of London SDE / AIC Activity (Github pages)
      1•1•0•0•Updated Oct 20, 2024Oct 20, 2024

    • legacy_data_loaders

      Public archive
      (DEPRECATED) Set of bash scripts used to clean and load data (CSV) into postgres db
      Shell
      •0•0•0•0•Updated Oct 20, 2024Oct 20, 2024

    • mapping_store

      Public
      Rust
      •0•1•0•1•Updated Sep 14, 2024Sep 14, 2024

    • nhs_data_architecture

      Public
      Functional, comprehensive schematics for NHS England data architecture
      HTML
      •0•4•0•0•Updated Sep 10, 2024Sep 10, 2024

    • cogstack_medcat_process

      Public archive
      Process design for CogStack/MedCAT at GSTT, offering data/analytics as a service
      0•0•0•0•Updated Aug 16, 2024Aug 16, 2024

    • onelondon_ontoserver

      Public
      Jupyter Notebook
      •1•0•0•0•Updated Jun 30, 2024Jun 30, 2024

    • nhs_aggregate_data_observatory

      Public
      Python
      •0•0•0•1•Updated Jun 25, 2024Jun 25, 2024

    • d3london.github.io

      Public
      The latest research and developments from the London AI Centre and Secure Data Environment
      0•0•0•0•Updated Jun 1, 2024Jun 1, 2024