Repositories list

• zernikegrams

  Public
  Stand-alone library for protein preprocessing

  Python

  •

  MIT License

  •0•2•0•0•Updated Feb 14, 2025Feb 14, 2025

• hermes

  Public
  Python

  •

  MIT License

  •0•3•0•0•Updated Feb 14, 2025Feb 14, 2025

• protein_holography

  Public
  Code for holographic machine learning of proteins

  HTML

  •

  MIT License

  •3•22•1•2•Updated Oct 29, 2024Oct 29, 2024

• dssp

  Public
  Application to assign secondary structure to proteins

  C++

  •

  BSD 2-Clause "Simplified" License

  •20•0•0•0•Updated Oct 28, 2024Oct 28, 2024

• protein_holography-web

  Public
  Python

  •0•4•0•0•Updated Oct 2, 2024Oct 2, 2024

• biophysics

  Public
  Jupyter Notebook

  •1•2•0•0•Updated Mar 2, 2023Mar 2, 2023

• Working_memory

  Public
  Jupyter Notebook

  •

  MIT License

  •0•1•0•0•Updated Dec 7, 2021Dec 7, 2021

• Tomoko

  Public
  Forward time simulator of genotypic evolution and fitness inference

  Julia

  •

  MIT License

  •0•1•0•0•Updated Dec 1, 2021Dec 1, 2021

• HIVTreatmentOptimization

  Public
  Analysis of untreated patient sequences and viremia data for the purposes of optimizing passive-transfer bNAb therapy

  Mathematica

  •0•2•0•0•Updated Nov 24, 2021Nov 24, 2021

• EscapeSimulator

  Public
  Simulate the escape dynamics of HIV-1 against all your favorite antibody combinations

  Julia

  •

  MIT License

  •0•1•0•0•Updated Nov 17, 2021Nov 17, 2021

• ImmuneMemoryDM

  Public
  analysis for Optimal evolutionary decision-making to store immune memory

  Jupyter Notebook

  •

  MIT License

  •0•1•0•0•Updated May 10, 2021May 10, 2021

• covid-bcr

  Public
  Analysis of BCR repertoires from covid-19 infections

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •1•7•0•0•Updated Mar 19, 2021Mar 19, 2021