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    19 repositories

    • ProTaxoVis

      Public
      Phylogenetic analysis of molecular pathways
      Python
      •
      MIT License
      •0•0•1•0•Updated Oct 23, 2024Oct 23, 2024

    • ProTaxoVis-examples

      Public
      Example input files for ProTaxoVis
      0•0•0•0•Updated Oct 23, 2024Oct 23, 2024

    • GEMCAT

      Public
      A toolbox for gene expression-based prediction of metabolic alterations
      Python
      •
      MIT License
      •0•2•0•0•Updated Oct 20, 2024Oct 20, 2024

    • prm_manuscript

      Public
      Contains files and data associated to the GEMCAT manuscript
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Oct 8, 2024Oct 8, 2024

    • PICor

      Public
      Python Isotope Correction Package
      Python
      •
      GNU General Public License v3.0
      •2•6•3•1•Updated Sep 24, 2024Sep 24, 2024

    • accoa

      Public
      Jupyter Notebook
      •
      MIT License
      •0•2•0•0•Updated Aug 12, 2024Aug 12, 2024

    • NADpools

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jul 16, 2024Jul 16, 2024

    • NAD-GSMM

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated May 18, 2024May 18, 2024

    • taxfinder

      Public
      Helper library for NCBI taxonomy ids
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 12, 2023Oct 12, 2023

    • thermophilesNAD

      Public
      Contains NAD biosynthesis model and python scripts to simulate the steady-state calculations.
      python3metabolic-modelscopasitemperature-dependencenad-metabolism
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 20, 2022Jun 20, 2022

    • euk_dim_dca

      Public
      Eukaryotic heterodimer DCA with structures
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 12, 2022Jan 12, 2022

    • paper_picor

      Public
      Public data and scripts of "Natural isotope correction improves analysis of protein modification dynamics" paper
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Oct 8, 2021Oct 8, 2021

    • MTOR-protein-interaction

      Public
      Coevolutionary analysis of MTOR proteins G3BP1 and TSC2
      Python
      •0•0•0•0•Updated Jul 9, 2020Jul 9, 2020

    • sbml-mod-web

      Public
      SBMLmod web application
      Component Pascal
      •
      GNU General Public License v2.0
      •0•0•1•0•Updated Jun 30, 2020Jun 30, 2020

    • Phylogenetic-analysis

      Public
      Scripts used for phylogenetic analysis of NAD metabolism
      Python
      •0•2•0•0•Updated Jul 10, 2019Jul 10, 2019

    • NAD_pathway_models

      Public
      0•0•0•0•Updated May 24, 2019May 24, 2019

    • COPASI

      Public
      COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
      C++
      •
      Artistic License 2.0
      •29•0•0•0•Updated Feb 19, 2018Feb 19, 2018

    • sbml-mod-ws

      Public
      SBMLmod web service
      Python
      •
      GNU General Public License v2.0
      •1•1•0•0•Updated Apr 18, 2017Apr 18, 2017

    • PyCopasi

      Public
      Repository with python scripts for the modification of Copasi files and runs
      Python
      •1•1•0•0•Updated Feb 10, 2017Feb 10, 2017