Repositories list

• CMH_Introduction_to_R

  Public
  Code and slides associated with the Introduction to R workshop at CMH in Feb 2025.

  HTML

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  MIT License

  •0•0•0•0•Updated Jan 7, 2025Jan 7, 2025

• web_application_spatialGE

  Public
  Web application to interface the spatialGE R package

  CSS

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  MIT License

  •0•0•0•0•Updated Dec 11, 2024Dec 11, 2024

• CMH_Github_test

  Public
  Testing to see if everyone can access and make changes with git in RStudio

  R

  •0•0•0•0•Updated Nov 20, 2024Nov 20, 2024

• CMH_test1

  Public
  testing github

  0•0•0•0•Updated Nov 20, 2024Nov 20, 2024

• spatialGE

  Public
  Methods for visualization and analysis of spatially-resolved gene expression

  R

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  Other

  •6•15•1•0•Updated Nov 14, 2024Nov 14, 2024

• landscape_sarcomas_orien

  Public
  Code to reproduce the results of the manuscript "Genomic, transcriptomic, and immunogenomic landscape of over 1,300 sarcomas of diverse histology subtypes: a report from the ORIEN collaborative network"

  HTML

  •0•0•0•0•Updated Nov 6, 2024Nov 6, 2024

• ccRCC_CosMx_SMI_2023

  Public
  R

  •0•2•0•0•Updated Nov 4, 2024Nov 4, 2024

• spatialTIME

  Public
  R

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  Other

  •5•4•3•2•Updated Oct 16, 2024Oct 16, 2024

• scSpatialSIM

  Public
  R package for the simulation of single-cell molecular spatial data on point patterns

  R

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  Other

  •0•4•1•0•Updated Oct 1, 2024Oct 1, 2024

• diff_expression_spatial_linear_models

  Public
  R

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  MIT License

  •1•0•0•0•Updated Jun 21, 2024Jun 21, 2024

• spatial_transcriptomics_leptomeningeal_disease

  Public
  R

  •1•0•0•0•Updated Jan 12, 2024Jan 12, 2024

• MetaboliteAnnotationDocker

  Public
  Docker container for annotating metabolites

  R

  •1•0•0•0•Updated Sep 15, 2023Sep 15, 2023

• Intro_to_R_2023

  Public
  Materials for Intro to R class for summer of 2023

  HTML

  •0•6•0•0•Updated Jul 13, 2023Jul 13, 2023

• Intro_to_R_2022

  Public
  Materials related to the Introduction to R USF course during Summer 2022

  HTML

  •2•4•0•0•Updated Mar 2, 2023Mar 2, 2023

• BTIME

  Public
  Bayesian analysis of multiplex immunofluorescence data

  R

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  MIT License

  •0•0•0•0•Updated Oct 21, 2022Oct 21, 2022

• iTIME

  Public
  interactive Tumor Immune MicroEnvironment

  JavaScript

  •6•4•1•0•Updated Sep 9, 2022Sep 9, 2022

• ST_book_chapter

  Public
  A primer on pre-processing, visualization, clustering, and phenotyping of barcode-based spatial transcriptomics data (from the book "Statistical Genomics") – Code to generate images in the the chapter

  R

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  Other

  •0•0•0•0•Updated Jul 26, 2022Jul 26, 2022

• ASA_SMI_2022

  Public
  slides and materials for ASA Statistical Methods in Imaging mini-course

  HTML

  •0•1•0•0•Updated May 25, 2022May 25, 2022

• Introduction-to-R_CMH

  Public
  Materials and information on Jordan's introductory course for R and Rstudio.

  HTML

  •6•0•0•0•Updated May 9, 2022May 9, 2022

• Introduction-to-R

  Public
  Materials and information on Moffitt Cancer Center's introductory course for R and Rstudio.

  HTML

  •6•4•1•0•Updated May 9, 2022May 9, 2022

• GEVisor

  Public
  Visualization of gene expression data from GeoMx-DSP experiments

  Jupyter Notebook

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  MIT License

  •2•2•1•1•Updated Dec 20, 2021Dec 20, 2021

• Permuted_Ripley_K

  Public
  R

  •0•0•0•0•Updated Dec 14, 2021Dec 14, 2021

• lab_hex

  Public
  R

  •0•0•0•0•Updated Sep 18, 2020Sep 18, 2020

• fridleylab-com

  Public
  Website source for the Fridley Lab website

  JavaScript

  •0•0•0•0•Updated Jul 14, 2020Jul 14, 2020