Repositories list

• aind-ephys-results-collector

  Public
  Code Ocean capsule for result collection

  Python

  •

  MIT License

  •0•0•1•0•Updated Feb 14, 2025Feb 14, 2025

• aind-ephys-rig-qc

  Public
  Post-experiment temporal alignment and quality control

  Python

  •

  MIT License

  •2•0•4•1•Updated Feb 14, 2025Feb 14, 2025

• aind-analysis-arch-result-access

  Public
  accessing results from aind analysis architecture

  Python

  •

  MIT License

  •0•0•3•0•Updated Feb 14, 2025Feb 14, 2025

• aind-ophys-decrosstalk-roi-images

  Public
  Python

  •

  MIT License

  •0•0•12•1•Updated Feb 14, 2025Feb 14, 2025

• aind-ophys-classifier

  Public
  Python

  •

  MIT License

  •0•0•4•0•Updated Feb 14, 2025Feb 14, 2025

• voxel

  Public
  General purpose microscope control repository

  Python

  •

  MIT License

  •4•4•14•0•Updated Feb 14, 2025Feb 14, 2025

• aind-data-access-api

  Public
  Library to interface with AIND databases

  aind-core-servicesaind-data-infrastructure

  Python

  •

  MIT License

  •0•2•13•1•Updated Feb 14, 2025Feb 14, 2025

• aind-fip-qc-raw

  Public
  a capsule to generate QC based on fip raw data asest

  Python

  •

  MIT License

  •0•0•3•0•Updated Feb 14, 2025Feb 14, 2025

• aind-ephys-ibl-gui-conversion

  Public
  convert ephys data for use in ibl gui

  Python

  •

  MIT License

  •1•0•0•1•Updated Feb 14, 2025Feb 14, 2025

• aind-data-transfer-service

  Public
  FastAPI service to run data compression and transfer jobs on the hpc

  aind-data-infrastructure

  Python

  •

  MIT License

  •0•3•14•0•Updated Feb 13, 2025Feb 13, 2025

• parallax

  Public
  GUI control software for the Modular Insertion System (MIS)

  processingacquisitionunder-development

  Python

  •

  MIT License

  •1•5•10•2•Updated Feb 13, 2025Feb 13, 2025

• aind-data-schema

  Public
  A library that defines AIND data schema and validates JSON.

  aind-core-services

  Python

  •

  MIT License

  •17•25•52•9•Updated Feb 13, 2025Feb 13, 2025

• aind-ophys-extraction-suite2p

  Public
  Combines cellpose and suite2p to extract sources, i.e. ROIs and their traces.

  Python

  •

  MIT License

  •0•0•2•0•Updated Feb 13, 2025Feb 13, 2025

• aind-ophys-motion-correction

  Public
  Python

  •

  MIT License

  •0•1•10•1•Updated Feb 13, 2025Feb 13, 2025

• dynamic-foraging-task

  Public
  Bonsai/Harp workflow for Dynamic Foraging with Python GUI for visualization and control

  Python

  •

  MIT License

  •4•5•101•7•Updated Feb 13, 2025Feb 13, 2025

• runze-control

  Public
  Python Driver for Aurora Pro Scientific (aka Runze Fluid) syringe pumps

  Python

  •

  MIT License

  •0•0•1•0•Updated Feb 13, 2025Feb 13, 2025

• aind-data-schema-models

  Public
  Data models used in aind-data-schema

  Python

  •

  MIT License

  •2•0•6•0•Updated Feb 13, 2025Feb 13, 2025

• Aind.Behavior.DynamicForaging

  Public
  A repository for the Dynamic Foraging task.

  Python

  •0•0•1•1•Updated Feb 13, 2025Feb 13, 2025

• aind-capsule-eye-tracking

  Public
  Port of the lims2 eye-tracking pipeline - outputs annotated points and ellipse fits for eye-perimeter, pupil and corneal reflection.

  Python

  •0•1•0•0•Updated Feb 13, 2025Feb 13, 2025

• aind-fip-dff

  Public
  This capsule takes an input raw NWB file of fiber data and creates processed DFF traces

  Python

  •

  MIT License

  •0•0•6•0•Updated Feb 13, 2025Feb 13, 2025

• aind-dynamic-foraging-qc

  Public
  Capsule for the QC of the dynamic foraging task

  Python

  •

  MIT License

  •0•0•3•0•Updated Feb 13, 2025Feb 13, 2025

• aind-metadata-service

  Public
  Service to retrieve Labtracks/Sharepoint info using a REST API

  aind-data-infrastructure

  Python

  •

  MIT License

  •1•3•16•2•Updated Feb 13, 2025Feb 13, 2025

• aind-beh-ephys-analysis

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Feb 13, 2025Feb 13, 2025

• aind-qc-portal

  Public
  Quality control portal

  Python

  •

  MIT License

  •0•1•12•1•Updated Feb 13, 2025Feb 13, 2025

• aind-units-nwb

  Public
  Code Ocean capsule to export ephys units data to NWB

  Python

  •

  MIT License

  •0•0•2•0•Updated Feb 13, 2025Feb 13, 2025

• aind-ecephys-nwb

  Public
  Code Ocean capsule to create an NWB file for Neuropixels data

  Python

  •

  MIT License

  •0•0•0•0•Updated Feb 13, 2025Feb 13, 2025

• dynamic-routing-unit-drift-qc-dashboard

  Public
  Python

  •0•0•0•0•Updated Feb 13, 2025Feb 13, 2025

• dynamicrouting-extra-unit-metrics

  Public
  A capsule for generating extra unit metrics for every unit in a datacube

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Feb 13, 2025Feb 13, 2025

• Aind.Behavior.VrForaging.Analysis

  Public
  A repository with analysis code for the aind-vr-foraging experiment

  Jupyter Notebook

  •

  MIT License

  •0•0•1•0•Updated Feb 13, 2025Feb 13, 2025

• pyharp

  Public
  Python implementation of the Harp protocol.

  Python

  •

  MIT License

  •2•0•1•0•Updated Feb 13, 2025Feb 13, 2025