Skip to content

Commit

Permalink
Merge pull request #5778 from openjournals/joss.07026
Browse files Browse the repository at this point in the history 
Merging automatically
  • Loading branch information
@editorialbot
editorialbot authored Aug 17, 2024
2 parents d9ec91e + 335fffd commit 33201a7
Show file tree
Hide file tree
Showing 5 changed files with 869 additions and 0 deletions.
283 changes: 283 additions & 0 deletions joss.07026/10.21105.joss.07026.crossref.xml
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,283 @@
<?xml version="1.0" encoding="UTF-8"?>
<doi_batch xmlns="http://www.crossref.org/schema/5.3.1"
xmlns:ai="http://www.crossref.org/AccessIndicators.xsd"
xmlns:rel="http://www.crossref.org/relations.xsd"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
version="5.3.1"
xsi:schemaLocation="http://www.crossref.org/schema/5.3.1 http://www.crossref.org/schemas/crossref5.3.1.xsd">
<head>
<doi_batch_id>20240817093836-c105dfa3f9c9c2b44d67198a75c2c08869502c48</doi_batch_id>
<timestamp>20240817093836</timestamp>
<depositor>
<depositor_name>JOSS Admin</depositor_name>
<email_address>[email protected]</email_address>
</depositor>
<registrant>The Open Journal</registrant>
</head>
<body>
<journal>
<journal_metadata>
<full_title>Journal of Open Source Software</full_title>
<abbrev_title>JOSS</abbrev_title>
<issn media_type="electronic">2475-9066</issn>
<doi_data>
<doi>10.21105/joss</doi>
<resource>https://joss.theoj.org</resource>
</doi_data>
</journal_metadata>
<journal_issue>
<publication_date media_type="online">
<month>08</month>
<year>2024</year>
</publication_date>
<journal_volume>
<volume>9</volume>
</journal_volume>
<issue>100</issue>
</journal_issue>
<journal_article publication_type="full_text">
<titles>
<title>BlueCelluLab: Biologically Detailed Neural Network
Experimentation API</title>
</titles>
<contributors>
<person_name sequence="first" contributor_role="author">
<given_name>Anıl</given_name>
<surname>Tuncel</surname>
</person_name>
<person_name sequence="additional"
contributor_role="author">
<given_name>Werner Van</given_name>
<surname>Geit</surname>
</person_name>
<person_name sequence="additional"
contributor_role="author">
<given_name>Mike</given_name>
<surname>Gevaert</surname>
</person_name>
<person_name sequence="additional"
contributor_role="author">
<given_name>Benjamin</given_name>
<surname>Torben-Nielsen</surname>
</person_name>
<person_name sequence="additional"
contributor_role="author">
<given_name>Darshan</given_name>
<surname>Mandge</surname>
</person_name>
<person_name sequence="additional"
contributor_role="author">
<given_name>İlkan</given_name>
<surname>Kılıç</surname>
</person_name>
<person_name sequence="additional"
contributor_role="author">
<given_name>Aurélien</given_name>
<surname>Jaquier</surname>
</person_name>
<person_name sequence="additional"
contributor_role="author">
<given_name>Eilif</given_name>
<surname>Muller</surname>
</person_name>
<person_name sequence="additional"
contributor_role="author">
<given_name>Lida</given_name>
<surname>Kanari</surname>
</person_name>
<person_name sequence="additional"
contributor_role="author">
<given_name>Henry</given_name>
<surname>Markram</surname>
</person_name>
</contributors>
<publication_date>
<month>08</month>
<day>17</day>
<year>2024</year>
</publication_date>
<pages>
<first_page>7026</first_page>
</pages>
<publisher_item>
<identifier id_type="doi">10.21105/joss.07026</identifier>
</publisher_item>
<ai:program name="AccessIndicators">
<ai:license_ref applies_to="vor">http://creativecommons.org/licenses/by/4.0/</ai:license_ref>
<ai:license_ref applies_to="am">http://creativecommons.org/licenses/by/4.0/</ai:license_ref>
<ai:license_ref applies_to="tdm">http://creativecommons.org/licenses/by/4.0/</ai:license_ref>
</ai:program>
<rel:program>
<rel:related_item>
<rel:description>Software archive</rel:description>
<rel:inter_work_relation relationship-type="references" identifier-type="doi">10.5281/zenodo.13325726</rel:inter_work_relation>
</rel:related_item>
<rel:related_item>
<rel:description>GitHub review issue</rel:description>
<rel:inter_work_relation relationship-type="hasReview" identifier-type="uri">https://github.com/openjournals/joss-reviews/issues/7026</rel:inter_work_relation>
</rel:related_item>
</rel:program>
<doi_data>
<doi>10.21105/joss.07026</doi>
<resource>https://joss.theoj.org/papers/10.21105/joss.07026</resource>
<collection property="text-mining">
<item>
<resource mime_type="application/pdf">https://joss.theoj.org/papers/10.21105/joss.07026.pdf</resource>
</item>
</collection>
</doi_data>
<citation_list>
<citation key="Hines2009">
<article_title>NEURON and python</article_title>
<author>Hines</author>
<journal_title>Frontiers in Neuroinformatics</journal_title>
<volume>3</volume>
<doi>10.3389/neuro.11.001.2009</doi>
<cYear>2009</cYear>
<unstructured_citation>Hines, M. L., Davison, A. P., &amp;
Muller, E. (2009). NEURON and python. Frontiers in Neuroinformatics, 3.
https://doi.org/10.3389/neuro.11.001.2009</unstructured_citation>
</citation>
<citation key="Tikidji2017">
<article_title>Software for brain network simulations: A
comparative study</article_title>
<author>Tikidji-Hamburyan</author>
<journal_title>Frontiers in Neuroinformatics</journal_title>
<volume>11</volume>
<doi>10.3389/fninf.2017.00046</doi>
<cYear>2017</cYear>
<unstructured_citation>Tikidji-Hamburyan, R. A., Narayana,
V., Bozkus, Z., &amp; El-Ghazawi, T. A. (2017). Software for brain
network simulations: A comparative study. Frontiers in Neuroinformatics,
11. https://doi.org/10.3389/fninf.2017.00046</unstructured_citation>
</citation>
<citation key="Kumbhar2019">
<article_title>CoreNEURON : An optimized compute engine for
the NEURON simulator</article_title>
<author>Kumbhar</author>
<journal_title>Frontiers in Neuroinformatics</journal_title>
<volume>13</volume>
<doi>10.3389/fninf.2019.00063</doi>
<cYear>2019</cYear>
<unstructured_citation>Kumbhar, P., Hines, M., Fouriaux, J.,
Ovcharenko, A., King, J., Delalondre, F., &amp; Schürmann, F. (2019).
CoreNEURON : An optimized compute engine for the NEURON simulator.
Frontiers in Neuroinformatics, 13.
https://doi.org/10.3389/fninf.2019.00063</unstructured_citation>
</citation>
<citation key="Awile2022">
<article_title>Modernizing the NEURON simulator for
sustainability, portability, and performance</article_title>
<author>Awile</author>
<journal_title>Frontiers in Neuroinformatics</journal_title>
<volume>16</volume>
<doi>10.3389/fninf.2022.884046</doi>
<cYear>2022</cYear>
<unstructured_citation>Awile, O., Kumbhar, P., Cornu, N.,
Dura-Bernal, S., King, J. G., Lupton, O., Magkanaris, I., McDougal, R.
A., Newton, A. J. H., Pereira, F., Săvulescu, A., Carnevale, N. T.,
Lytton, W. W., Hines, M. L., &amp; Schürmann, F. (2022). Modernizing the
NEURON simulator for sustainability, portability, and performance.
Frontiers in Neuroinformatics, 16.
https://doi.org/10.3389/fninf.2022.884046</unstructured_citation>
</citation>
<citation key="kernighan1984unix">
<volume_title>The UNIX programming
environment</volume_title>
<author>Kernighan</author>
<volume>270</volume>
<doi>10.1002/spe.4380090102</doi>
<cYear>1984</cYear>
<unstructured_citation>Kernighan, B. W., &amp; Pike, R.
(1984). The UNIX programming environment (Vol. 270). Prentice-Hall
Englewood Cliffs, NJ.
https://doi.org/10.1002/spe.4380090102</unstructured_citation>
</citation>
<citation key="Dai2020">
<article_title>The SONATA data format for efficient
description of large-scale network models</article_title>
<author>Dai</author>
<journal_title>PLoS Computational Biology</journal_title>
<volume>16</volume>
<doi>10.1371/journal.pcbi.1007696</doi>
<cYear>2020</cYear>
<unstructured_citation>Dai, K., Hernando, J., Billeh, Y. N.,
Gratiy, S. L., Planas, J., Davison, A. P., Dura-Bernal, S., Gleeson, P.,
Devresse, A., Dichter, B. K., Gevaert, M., King, J. G., Geit, W. A. H.
van, Povolotsky, A. V., Muller, E., Courcol, J. D., &amp; Arkhipov, A.
(2020). The SONATA data format for efficient description of large-scale
network models. PLoS Computational Biology, 16.
https://doi.org/10.1371/journal.pcbi.1007696</unstructured_citation>
</citation>
<citation key="martin2003agile">
<volume_title>Agile software development: Principles,
patterns, and practices</volume_title>
<author>Martin</author>
<doi>10.1002/pfi.21408</doi>
<cYear>2003</cYear>
<unstructured_citation>Martin, R. C. (2003). Agile software
development: Principles, patterns, and practices. Prentice Hall PTR.
https://doi.org/10.1002/pfi.21408</unstructured_citation>
</citation>
<citation key="parnas1972criteria">
<article_title>On the criteria to be used in decomposing
systems into modules</article_title>
<author>Parnas</author>
<journal_title>Communications of the ACM</journal_title>
<issue>12</issue>
<volume>15</volume>
<doi>10.1007/978-3-642-59412-0_26</doi>
<cYear>1972</cYear>
<unstructured_citation>Parnas, D. L. (1972). On the criteria
to be used in decomposing systems into modules. Communications of the
ACM, 15(12), 1053–1058.
https://doi.org/10.1007/978-3-642-59412-0_26</unstructured_citation>
</citation>
<citation key="van2014pep">
<article_title>Pep 484–type hints</article_title>
<author>Van Rossum</author>
<journal_title>Index of Python Enhancement
Proposals</journal_title>
<cYear>2014</cYear>
<unstructured_citation>Van Rossum, G., Lehtosalo, J., &amp;
Langa, L. (2014). Pep 484–type hints. Index of Python Enhancement
Proposals.</unstructured_citation>
</citation>
<citation key="lehtosalo2017mypy">
<article_title>Mypy-optional static typing for
python</article_title>
<author>Lehtosalo</author>
<journal_title>URL: https://mypy-lang.org</journal_title>
<cYear>2017</cYear>
<unstructured_citation>Lehtosalo, J., Rossum, G. v,
Levkivskyi, I., Sullivan, M. J., Fisher, D., Price, G., Lee, M., Seyfer,
N., Barton, R., Ilinskiy, S., &amp; others. (2017). Mypy-optional static
typing for python. URL: Https://Mypy-Lang.org.</unstructured_citation>
</citation>
<citation key="pydantic_v2.6.4">
<article_title>Pydantic</article_title>
<author>Colvin</author>
<cYear>2024</cYear>
<unstructured_citation>Colvin, S., Jolibois, E., Ramezani,
H., Badaracco, A. G., Dorsey, T., Montague, D., Matveenko, S.,
Trylesinski, M., Runkle, S., Hewitt, D., &amp; Hall, A. (2024). Pydantic
(Version v2.6.4).
https://docs.pydantic.dev/latest/</unstructured_citation>
</citation>
<citation key="fernando_pereira_2024_10809263">
<article_title>BlueBrain/neurodamus: 3.1.0</article_title>
<author>Pereira</author>
<doi>10.5281/zenodo.10809263</doi>
<cYear>2024</cYear>
<unstructured_citation>Pereira, F., Ji, W., Magkanaris, I.,
Alonso, J. B., Kumbhar, P., Săvulescu, A., Heeren, E., Sergio, Bellotta,
A., delalondre, fabien, Wolf, M., Geit, W. V., Lupton, O., Grosheintz,
L., Temerev, A., Cornu, N., Awile, O., fschuerm, JCGoran, … bbp-hpcteam.
(2024). BlueBrain/neurodamus: 3.1.0 (Version 3.1.0). Zenodo.
https://doi.org/10.5281/zenodo.10809263</unstructured_citation>
</citation>
</citation_list>
</journal_article>
</journal>
</body>
</doi_batch>
Binary file added joss.07026/10.21105.joss.07026.pdf
View file
Binary file not shown.
Loading

0 comments on commit 33201a7

Please sign in to comment.