squash codecov workflow updates into main (#69)

* update badge workflow

* remove extraneous lines

* update name

* merge into tests workflow

* use Codecov badge

* separate into two workflows

* update name

* make separate jobs instead of separate workflows

.editorconfig

@@ -101,6 +101,6 @@ ij_python_wrap_long_lines = false
 indent_size = 2
 ij_yaml_keep_indents_on_empty_lines = false
 ij_yaml_keep_line_breaks = true
-ij_yaml_space_before_colon = true
+ij_yaml_space_before_colon = false
 ij_yaml_spaces_within_braces = true
 ij_yaml_spaces_within_brackets = true

.github/workflows/tests.yml

@@ -10,7 +10,6 @@ jobs:
       fail-fast: true
       matrix:
         python-version: [ 3.6, 3.7, 3.8 ]
-
     steps:
       - name: Checkout repository
         uses: actions/checkout@v2
@@ -26,7 +25,7 @@ jobs:
           restore-keys: ${{ runner.os }}-pip-${{ matrix.python-version }}-
       - name: Install dependencies
         run: |
-          apt-get update -y && apt-get install -y libnetcdf-dev libnetcdff-dev
+          apt update -y && apt install -y libnetcdf-dev libnetcdff-dev
           pip install wheel
           pip install -e .[development]
       - name: Lint with flake8
@@ -35,7 +34,40 @@ jobs:
           flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
           # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
           flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
-      - name: Test with coverage
+      - name: Run tests
+        run: python -m nose --nologcapture --verbose
+  coverage:
+    name: Upload coverage to Codecov
+    needs: [ tests ]
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: true
+      matrix:
+        python-version: [ 3.8 ]
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v2
+      - name: Setup Python
+        uses: actions/setup-python@v2
+        with:
+          python-version: ${{ matrix.python-version }}
+      - name: Restore cached dependencies
+        uses: actions/cache@v2
+        with:
+          path: ~/.cache/pip
+          key: ${{ runner.os }}-pip-${{ matrix.python-version }}-${{ hashFiles('setup.py') }}
+          restore-keys: ${{ runner.os }}-pip-${{ matrix.python-version }}-
+      - name: Install dependencies
+        run: |
+          apt update -y && apt install -y libnetcdf-dev libnetcdff-dev
+          pip install wheel
+          pip install -e .[development]
+      - name: Run tests with coverage
         run: coverage run --source adcircpy -m nose --nologcapture --verbose
       - name: Generate coverage report
         run: coverage report -m
+      - name: Upload coverage to Codecov
+        uses: codecov/codecov-action@v1
+        with:
+          flags: python${{ matrix.python-version }}-${{ runner.os }}
+          fail_ci_if_error: true

README.md

@@ -2,7 +2,7 @@
 ## Python library for automating ADCIRC model runs.
 [![tests](https://github.com/JaimeCalzadaNOAA/adcircpy/workflows/tests/badge.svg)](https://github.com/JaimeCalzadaNOAA/adcircpy/actions?query=workflow%3Atests)
 [![build](https://github.com/JaimeCalzadaNOAA/adcircpy/workflows/build/badge.svg)](https://github.com/JaimeCalzadaNOAA/adcircpy/actions?query=workflow%3Abuild)
-![coverage](.github/badges/badge.svg)
+[![codecov](https://codecov.io/gh/JaimeCalzadaNOAA/adcircpy/branch/main/graph/badge.svg?token=BQWB1QKJ3Q)](https://codecov.io/gh/JaimeCalzadaNOAA/adcircpy)
 [![version](https://img.shields.io/pypi/v/adcircpy)](https://pypi.org/project/adcircpy)
 [![license](https://img.shields.io/github/license/JaimeCalzadaNOAA/adcircpy)](https://opensource.org/licenses/gpl-license)